Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1402 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGTCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCAGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGCATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGCAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAAGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.07 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVESVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQSETNAQLKLEEMQRKGGHFDGEENKDRSQNHNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEQAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18190733 18192081 - CrPI670011_11g014020.1 Cre11g1402 513147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1402 296 FunFam Myb family transcription factor 15 73 - -
Cre11g1402 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Cre11g1402 296 MobiDBLite consensus disorder prediction 230 277 - -
Cre11g1402 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cre11g1402 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cre11g1402 296 MobiDBLite consensus disorder prediction 218 284 - -
Cre11g1402 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Cre11g1402 296 Gene3D - 15 73 - -
Cre11g1402 296 MobiDBLite consensus disorder prediction 90 109 - -
Cre11g1402 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1479 Cre-Chr10:28623454 Cre11g1402 Cre-Chr11:18190733 2.60E-38 dispersed
Cre10g1808 Cre-Chr10:32486563 Cre11g1402 Cre-Chr11:18190733 1.00E-19 dispersed
Cre11g0755 Cre-Chr11:4765142 Cre11g1402 Cre-Chr11:18190733 7.50E-09 dispersed
Cre11g1402 Cre-Chr11:18190733 Cre11g2062 Cre-Chr11:32419062 6.50E-13 dispersed
Cre11g1402 Cre-Chr11:18190733 Cre02g2184 Cre-Chr2:35487802 2.40E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54689 PF14379 Myb_CC_LHEQLE 1.60E-22 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1402 - - - 0.0