Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00241 ATGGCCACTGTCACCACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGTGCCGCCCGATCAAGATTCCTTTCCGGTTCTTCCGGTAAACTCCAACGTGTGCTCTCGGTTAAGCCAGTTTCTGCTTCTTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAAGGAGAATGGTTGCCTGGTCTCCCATCTCCGATGTATTTAAACGGCAGTCTTCCCGGCGACAATGGATTTGACCCGTTGGGATTAGCGGAAGACCCAGAGAATTTGAGGTGGTATGTACAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTTGGTGTCGCCGGAATGCTTCTACCGGAGGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCTGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTTGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTACCCCCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTAAATTTCGCCCCAACTCTTGAAGCTAAAGAGAAGGAAATAGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGGAAAGGGCCATTTGACAATCTTTTGCAGCACATCTCTGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 759 49.01 MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAKKGEWLPGLPSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1525225 1527210 - CsaV3_1G002410.1 Csa01g00241 514738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00241 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Csa01g00241 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Csa01g00241 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Csa01g00241 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Csa01g00241 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00560 Csa01g00241 CCT
Csa01g00241 Csa01g00560 ECH
Csa01g00560 Csa01g00241 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00241 Csa-Chr1:1525225 Csa05g02208 Csa-Chr5:24869407 2.78E-75 dispersed
Csa04g01602 Csa-Chr4:15434949 Csa01g00241 Csa-Chr1:1525225 1.00E-31 transposed
Csa01g03255 Csa-Chr1:28713310 Csa01g00241 Csa-Chr1:1525225 4.36E-48 transposed
Csa01g00241 Csa-Chr1:1525225 Csa01g00560 Csa-Chr1:3626647 5.89E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00241 K08910 - csv:101222701 501.516