Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00431 ATGTGGACGTTAGGTTATGATGACAATGGTGGAGAGTTTTGCTTCTCAGAGGCCACTGCCTTTCATGGCGCTCGTAAGCTTCGACCTCTCGTTCCTCGCCCATTGCTATCCCTTCGTGCCAATGGTCGTCGTCCCAACTTCTCTTCTCAATATTACCACATTGGTAATGTTTTGGATGAGGAAAGGAAGAGAGATCAGTACTTGTTGAATAATGAAAAGAGTTCATCATCATCATCAACAACATCAAGTACTCCAATAGTAGTGAGCTCATCGAGATGGAATCCAACGGTGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACAAGAACGCCCTCCGCCGATCAAATCCAACACATAACCGCCCAGCTCCGCCGCTTTGGCAAGATAGAAGGCAAGAATGTGTTTTATTGGTTTCAAAATCACAAGGCTAGAGAACGCCAAAAACGACGCCGTCAAACTGCCGCCGATCAAACCAAATATTCCGAGAGAGAAAAAGAAGAGTACGAAATTGAAGAGACAAAGACGAAGTGCAGGTGGCCGGGAACCCCAACACCACCATCTACTGCTACTCTACTTTCACAGGAATGTACAGAAACACAGAGACGACGAACAAAATTAGTTGAATTGGAAGAAGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGACGAGACATGGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTGTTGTCGAATCCCACAACGAAGACCGAGGACACAACGTCGTCATTGACGACATCAACGACGGGGACAAGGATTCCAAAGCGATGACACTTCAGTTGTTTCCTCTACGAAGTACCAAGTTCTACAAATACGATGGCGAGAGAGAGGGACGACGAGATGGTCGATCTCGATCGGAGATCATGTCTAATTCGGACGTGACCAAAAGCTTCACCTTATCTCCAAGTTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA 1005 45.67 MWTLGYDDNGGEFCFSEATAFHGARKLRPLVPRPLLSLRANGRRPNFSSQYYHIGNVLDEERKRDQYLLNNEKSSSSSSTTSSTPIVVSSSRWNPTVEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAADQTKYSEREKEEYEIEETKTKCRWPGTPTPPSTATLLSQECTETQRRRTKLVELEEEEEEETRRESVERDETWNCQLINPTRKTQHLNSVVESHNEDRGHNVVIDDINDGDKDSKAMTLQLFPLRSTKFYKYDGEREGRRDGRSRSEIMSNSDVTKSFTLSPSCSFQFFEFLPLKN* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2700556 2703593 + CsaV3_1G004310.1 Csa01g00431 514928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00431 334 MobiDBLite consensus disorder prediction 152 179 - -
Csa01g00431 334 Gene3D - 88 151 - -
Csa01g00431 334 Pfam Homeodomain 90 150 IPR001356 GO:0003677
Csa01g00431 334 ProSiteProfiles 'Homeobox' domain profile. 96 151 IPR001356 GO:0003677
Csa01g00431 334 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 58 334 - -
Csa01g00431 334 Coils Coil 209 229 - -
Csa01g00431 334 SUPERFAMILY Homeodomain-like 90 155 IPR009057 -
Csa01g00431 334 SMART HOX_1 88 155 IPR001356 GO:0003677
Csa01g00431 334 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 58 334 IPR044555 GO:0003700|GO:0099402
Csa01g00431 334 MobiDBLite consensus disorder prediction 149 191 - -
Csa01g00431 334 CDD homeodomain 92 152 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00712 Csa01g00431 CCT
Csa01g00431 Csa01g00712 ECH
Csa01g00712 Csa01g00431 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00431 Csa-Chr1:2700556 Csa06g01701 Csa-Chr6:14959644 3.98E-28 dispersed
Csa01g02397 Csa-Chr1:21264100 Csa01g00431 Csa-Chr1:2700556 2.94E-29 transposed
Csa02g01931 Csa-Chr2:18135487 Csa01g00431 Csa-Chr1:2700556 1.23E-28 transposed
Csa06g03319 Csa-Chr6:27760270 Csa01g00431 Csa-Chr1:2700556 2.17E-10 transposed
Csa01g00431 Csa-Chr1:2700556 Csa01g00712 Csa-Chr1:4514227 1.42E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30640 PF00046 Homeodomain 5.60E-19 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00431 - - csv:105434593 608.986