Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00560 ATGGCAACTGTCATTACTCAGGCTTCTGCCACTGTCTTCCGGCCATGTGCTTCAAGATCGAGGTTTCTCTCGGGGTCCTCGGGAAAGTTTAACAGAGCCTTGTCTGTTAAGCCAACAACTTCTTCAATTCCTAATGCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCGGGTTTGCCATCACCAACTTATCTTGATGGAAGCCTTCCAGGTGACAACGGATTTGATCCTCTAGGACTTGCAGAGGATCCCGAAAACTTGAGGTGGTATACGCAAGCCGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTGACAAATTATGGAATCATCAATGTACCAAAATGGTACGATGCGGGGAAAGCAGAGTATTTTGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAATCAAGATCCAATTTTTAAGCAATACAGCTTGCCACCAAATGATGTTGGGTACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAGAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACTGGAAAAGGTCCATTTGACAACTTCATGCAGCACATTTCAGACCCATGGCACAACACAATAGTTCAAACACTAAGGTGA 753 44.62 MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTLR* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3626647 3627932 - CsaV3_1G005600.1 Csa01g00560 515057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00560 250 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Csa01g00560 250 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Csa01g00560 250 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 249 IPR001344 GO:0009765|GO:0016020
Csa01g00560 250 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 249 - -
Csa01g00560 250 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00560 Csa01g00241 CCT
Csa01g00241 Csa01g00560 ECH
Csa01g00560 Csa01g00241 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00560 Csa-Chr1:3626647 Csa04g02748 Csa-Chr4:26342869 3.84E-33 dispersed
Csa01g03007 Csa-Chr1:26223514 Csa01g00560 Csa-Chr1:3626647 4.95E-65 transposed
Csa01g03255 Csa-Chr1:28713310 Csa01g00560 Csa-Chr1:3626647 3.79E-48 transposed
Csa02g01960 Csa-Chr2:18395695 Csa01g00560 Csa-Chr1:3626647 7.47E-67 transposed
Csa05g01755 Csa-Chr5:20901153 Csa01g00560 Csa-Chr1:3626647 4.27E-39 transposed
Csa05g02208 Csa-Chr5:24869407 Csa01g00560 Csa-Chr1:3626647 4.64E-77 transposed
Csa01g00241 Csa-Chr1:1525225 Csa01g00560 Csa-Chr1:3626647 5.89E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00560 K08910 - csv:101218675 518.464