Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01869 ATGGCTGGTTCTACTTCTGGCTTTCAATGTGAAACAATGAAGTGTTCTTTTGGAGTTAGCAGTTCTCAGCCATTGATTGGAGTTGATACTTCTTTTTCATCTACTCTTGGATCTTCTTCAACAACTCCTCTATGTGAATTATCCACAGCTTCTTTGGAGAATGAGGGAGTGAAAACCATTTCTAACATTCTTCATGATCCTTCAACTTTGAGTTTTGATATGTTTGGAACTGGGAACTTCTCAGATATGGTGGGTTCTTTTGGCTTTCTAACTGAAGCTGATCATAGCCAGATCGCCAATATTAAGTGTCCATTTAGTTATGTGCAAATTCTGGATGACGAAGAAATGGTCTCACCAAAGAACGATGCAAAGTCTCGACCCGATTGCGTTAGTGAAAATCAAAGAAAATTTGTTCTTGGTTCCAATTCTTCTAGCCCAAATAAGAATGCTGAAGATAACTTTAATGTGGAACCAACTGAGATCCTTGATAAAGCTGACAAAACACAGAAGGTTGAGCATCGATTGAGTGCAAATTTTAACACCAAACCAGATAGTAAAAAAGCCAAAGGAGGCTCTCAAAATGTACAAGCCCCCAAGGAGAATTATATTCATGTTCAAGCGCGAAGGGGGCGAGCTGCTAATAACCATAGCCTCGCAGAAAGGGTTAGAAGGGAAAAAATCAGCGAACGAATGAAGTTGCTGCAACAGCTTGTTCCTGGATGCCATCAGATTACCGGGAAAACCGTGGTGCTCGACGAAATTATTAACTATGTACAATCACTGCAACAACAGGTGGAGTTTCTATCAATGAAACTCGCAAGTGTCGGACTAGAATCAAGCTTGGAGGCAGAGCAGATTCTACTCACAAATAATTCATACCTTTCGTCATCGAATGTTCTTTGTAAGAGAGGCGAAAACGTCAACGATCCTAGATCAAGGATAATTCACACAAGTCCTCATGTCACGTTTCAACTTTATGGAACAACGCCAACCATGCCAAGAACTACATCTCCTTCAACTTTCTAA 1026 40.45 MAGSTSGFQCETMKCSFGVSSSQPLIGVDTSFSSTLGSSSTTPLCELSTASLENEGVKTISNILHDPSTLSFDMFGTGNFSDMVGSFGFLTEADHSQIANIKCPFSYVQILDDEEMVSPKNDAKSRPDCVSENQRKFVLGSNSSSPNKNAEDNFNVEPTEILDKADKTQKVEHRLSANFNTKPDSKKAKGGSQNVQAPKENYIHVQARRGRAANNHSLAERVRREKISERMKLLQQLVPGCHQITGKTVVLDEIINYVQSLQQQVEFLSMKLASVGLESSLEAEQILLTNNSYLSSSNVLCKRGENVNDPRSRIIHTSPHVTFQLYGTTPTMPRTTSPSTF* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17778099 17780726 - CsaV3_2G025890.1 Csa02g01869 519926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01869 341 Gene3D - 208 286 IPR036638 GO:0046983
Csa02g01869 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983
Csa02g01869 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 290 IPR024097 GO:0006355
Csa02g01869 341 MobiDBLite consensus disorder prediction 181 198 - -
Csa02g01869 341 Pfam Helix-loop-helix DNA-binding domain 214 262 IPR011598 GO:0046983
Csa02g01869 341 SMART finulus 217 267 IPR011598 GO:0046983
Csa02g01869 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 275 IPR036638 GO:0046983
Csa02g01869 341 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 290 - -
Csa02g01869 341 MobiDBLite consensus disorder prediction 177 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01869 Csa04g02505 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01869 Csa-Chr2:17778099 Csa05g01353 Csa-Chr5:14293739 6.06E-42 dispersed
Csa02g01869 Csa-Chr2:17778099 Csa04g02505 Csa-Chr4:24884098 3.25E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30976 PF00010 HLH 7.40E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01869 - - csv:101203010 636.721