Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03971 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCAGTGGACCCGTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTAAGCCGATCGTATGGGGTTTATAATTTCAATGAGCTAGGGTTACAAAAATGCACATCTTGGCTGGCTGATGATTCGGGGAGCAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATCGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAAATACGGACACTATGTGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAATACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCTGAGCCTGTCCTTTCTACTATGTTTCAGAAGCTTCTTCGAGGCTTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCTGGCTTAGAGAACTCGATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACGTACATGTCACCGGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTACAGATTTTGGATGACCCGTCTCCATCGCCATCAAAACATAAGTTTTCGTCGGAGTTTTGCTCGTTTGTCGATGCCTGCTTGCAAAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGAATGAACAAGTAGACTTAGCAGCATTTGTCCAGAATGTGTTTGATCCAACACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGACTTCTGGCACCATACAAAAGCTTTATTCCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGGCAAACTATCAGAGATTCGAAGTACGTTAGCAGGAGATTGGCCTCTTGAAAAACTTGTTCACGTTGTCGAGAAACTCCAATGTCGAGCCCACGGTCGGGACGGAGTTGCCATAAGGGTGTCAGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAAAGCAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATTGAACCGAGCAATCTCATCGGTCGTTATTTCATTGCTAAACAAGAGCTTTATATAATCCAATAG 1557 43.16 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSTMFQKLLRGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSSEFCSFVDACLQKDADARPTAEQLLSHPFIKKYENEQVDLAAFVQNVFDPTQRMKDLADMLTIHYYLLFDGPDDFWHHTKALFHESSTLSFSGKQFSGPNDIFGKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34710986 34716082 + CsaV3_3G042770.1 Csa03g03971 524876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03971 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Csa03g03971 518 SUPERFAMILY Protein kinase-like (PK-like) 85 365 IPR011009 -
Csa03g03971 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03971 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Csa03g03971 518 PANTHER - 2 517 - -
Csa03g03971 518 Gene3D - 365 516 - -
Csa03g03971 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Csa03g03971 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Csa03g03971 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Csa03g03971 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03971 518 Gene3D Phosphorylase Kinase; domain 1 59 164 - -
Csa03g03971 518 CDD PKc_MAPKK_plant_like 84 344 - -
Csa03g03971 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03971 518 Gene3D Transferase(Phosphotransferase) domain 1 165 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00082 Csa-Chr2:578525 Csa03g03971 Csa-Chr3:34710986 5.28E-72 dispersed
Csa03g02812 Csa-Chr3:26953475 Csa03g03971 Csa-Chr3:34710986 1.48E-31 dispersed
Csa03g03971 Csa-Chr3:34710986 Csa06g02776 Csa-Chr6:24207515 3.47E-38 dispersed
Csa03g03971 Csa-Chr3:34710986 Csa01g02954 Csa-Chr1:25913871 3.20E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78070 PF00069 Pkinase 1.30E-59 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03971 K20607 - csv:101217978 1030.39