Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01830 ATGTTTTGTCCTTTCCAAGTCAGTTTCGTATATAAAGCTTCTCTCCCTCAATTTGTCTTGCTCAGAAACCTTACACTTCTGTTTCTTACATTAAACTGGAGGCCACAAATCCTTCCATCTCTTCCCATGGCTACCTCAATCAACAATCCCCAATTCTCTCATTTGGATTCTTTCTCTAACCTCCGCTCCGACTCATCACTTCGTTGTTGCAATTTCCCTTCCATTCCCACCAATCATCTCCTAATCAACAACCACGACGACAATGAAGATTTCTCTAGTGACGATGACAACGACAATGACTCTGATTTTACCCATTTGATTCGTAAAGGGATTCAAGAATTGGAACCCTCCATTTTGGACCCCAGAGATTTCGGAACGGCTGATTGTTGGATCCACCGAAATGAATCATTGGTTCGTCTTACCGGTAAACATCCCTTCAATTCCGAGCCGCCGTTATCTCGTTTGATGCACCATGGGTTCATCACTCCCGTCCCTCTCCATTACGTTCGTAACCACGGTCCGGTACCCAAGGCTAAGTGGGAGGATTGGACCGTTGAGGTTTGCGGTTTAGTAAAAAAACCAACCCGGTTCACTATGAATCAACTCGTAAGCGATTTCAGCAGCCGTGAGTTTCCTGTCACACTCGTCTGCGCCGGAAACCGCCGTAGGGAGCACAATATGGTTAAAAAAACCATTGGCTTTAACTGGGGTGCAGGCGGGACTTCCACCTCGGTCTGGCGAGGGGTTCCACTACGAGACGTTCTGAAACGGTGTGGTATCTTCAGTCGTAAAAAAGGAGCACTCAATGTCTGCTTTGAAGGAGCTGAATGTCTGCCCGGCGGCGGTGGGTCCAAGTACGGTACTAGTATCAGAAAGGAAATAGCCATGGACCCAGCTAGAGATATAATTTTAGCCTATATGCAAAACGGGGACGTACTGTCACCGGACCATGGTTTTCCGGTGCGGGTTATCATCCCCGGTTTCATCGGTGGAAGGATGGTGAAATGGGTAAAACGCATTATCGTAACAACACAAGAATCCGATAGCTATTACCATTATAGAGACAACAAAGTCCTCCCTTCCCATGTCGATGAAGAATTAGCAAACGCAGAAGCTTGGTGGTATAAGCCGGAGTGTATTATTACTGAGTTGAACATAAACTCGGTGATAACGACCCCATGTCATGAGGAAATCTTGCCGATAAATTCATGGACGACACAACGGCCATACACGTTGAGGGGATATGCATATTCTGGAGGAGGAAAGAAAGTGACACGGGTGGAGGTGACTTTAGATGGTGGTGAGTCGTGGCATGTTTGCGATTTGGACTGTCCTGAGAAAGCTACAAAATACGGCAAATATTGGTGTTGGTGTTTTTGGTCACTGGAAGTTGAAGTTCTTGACTTACTTGCTGCTAAAGAAATTGCAGTACGCGCTTGGGATGAAACTTTCAACACTCAACCTGAAAAGCTCATTTGGAATCTCATGGGAATGATGAACAATTGTTGGTTTCAAGTGAAAACCAACATGTGTAAACCGCATAAAGGAGAGATCGGAATCGTTTTTGAACACCCAACTGTACCCGGCAACCAATCCGGCGGATGGATGGGTAAAGAAAGACATCTCGAAATATCCACCGAATCCAATCAAACCATGAAGAAGAGTATTTCGTCTCCCTTCATCAACACAACCTCAAAGACTTACTCCATCTCTGACGTTCAAAAGCACAACTCAGACCAATCCGCCTGGATCGTCGTACACGGCCATGTTTACGACTGCACCCGTTTCCTCAAAGACCACCCTGGGGGTATGGACAGCATTCTCATCAATGCCGGTACCGATTGTACGGAGGAATTCGACGCCATTCACTCGGACAAAGCCAAAAAAATGCTAGAGGAATACAGAATCGGCGAGTTGATCACCACCGGCTACATATCGGATTCATCGCCTAACAACTCCATCCATGGGGATTCTTTTAGTTCTAATCCTCACTTGGCTCCAATAACAGAAACGAGGCGCGTGGCTTTAATCCCGCGTGAAAAAATTCGCTGCAAATTAGTTTCCAAAACGTCAATCTCACACGACGTCAGACGGTTCAGAATCGGCTTGCCTTTAGACGATCAAATCCTGGGATTACCTGTAGGGAAACACATATTCCTATGTGCAAATATAGACGGTAAGCTCTGTATGAGGGCCTACACACCAACCACCTGCATCAATCAAGTCGGCTATTTCGACTTAGTGGTCAAAATCTATTTCAAAAACGTGAACCCAAAATTTCCAAACGGCGGACTCATGTCTCAGCATTTGGAGTCTCTCCCACTTGGTTCCGAACTAGAAATCAAAGGTCCGTTAGGCCACATCGAATACACCGGAAACGGAAATTTCGTGGTGGACGGTAGAGTAAAGAAGGCAAAGAAGCTAGCAATGTTGGCCGGCGGAACGGGAATAACGCCGATATATCAAGTGGCGCAGGCGGTGCTGAAGGATCCTGAGGATGAAACAGAGATGTTTTTGGTGTATGCGAACAGAACGGAAAATGATATTCTGTTGAAGGATGAGTTGGATGAATGGAGTAAAAGGGATAAGAGGTTTAAAGTGTGGTACGTTGTGAATGAGAGTGTAAGGGAAGGGTGGGAATATAGTGTGGGAGTGGTGAGGGAGAGCATTATGAGGGAGCATCTTCCAGAAGCTTCGCCGGAAACAATGGCGTTGGCTTGTGGACCACCGCCAATGATTAAGTTTGCTGTGAAACCCAGTTTGGAGAAGATGAATTACGACACTACTAACTCGTTGTTGGTGTTTTAG 2808 46.05 MFCPFQVSFVYKASLPQFVLLRNLTLLFLTLNWRPQILPSLPMATSINNPQFSHLDSFSNLRSDSSLRCCNFPSIPTNHLLINNHDDNEDFSSDDDNDNDSDFTHLIRKGIQELEPSILDPRDFGTADCWIHRNESLVRLTGKHPFNSEPPLSRLMHHGFITPVPLHYVRNHGPVPKAKWEDWTVEVCGLVKKPTRFTMNQLVSDFSSREFPVTLVCAGNRRREHNMVKKTIGFNWGAGGTSTSVWRGVPLRDVLKRCGIFSRKKGALNVCFEGAECLPGGGGSKYGTSIRKEIAMDPARDIILAYMQNGDVLSPDHGFPVRVIIPGFIGGRMVKWVKRIIVTTQESDSYYHYRDNKVLPSHVDEELANAEAWWYKPECIITELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGESWHVCDLDCPEKATKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFQVKTNMCKPHKGEIGIVFEHPTVPGNQSGGWMGKERHLEISTESNQTMKKSISSPFINTTSKTYSISDVQKHNSDQSAWIVVHGHVYDCTRFLKDHPGGMDSILINAGTDCTEEFDAIHSDKAKKMLEEYRIGELITTGYISDSSPNNSIHGDSFSSNPHLAPITETRRVALIPREKIRCKLVSKTSISHDVRRFRIGLPLDDQILGLPVGKHIFLCANIDGKLCMRAYTPTTCINQVGYFDLVVKIYFKNVNPKFPNGGLMSQHLESLPLGSELEIKGPLGHIEYTGNGNFVVDGRVKKAKKLAMLAGGTGITPIYQVAQAVLKDPEDETEMFLVYANRTENDILLKDELDEWSKRDKRFKVWYVVNESVREGWEYSVGVVRESIMREHLPEASPETMALACGPPPMIKFAVKPSLEKMNYDTTNSLLVF* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17957732 17961707 - CsaV3_4G028560.1 Csa04g01830 527440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01830 935 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 779 929 IPR039261 -
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 138 152 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 453 463 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 426 438 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 213 224 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 239 254 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 297 313 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 314 327 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 160 176 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 224 236 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 381 393 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 491 504 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 478 490 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 330 343 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 412 426 IPR008335 GO:0016491
Csa04g01830 935 Gene3D - 383 559 - -
Csa04g01830 935 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 563 644 IPR036400 -
Csa04g01830 935 Pfam Oxidoreductase NAD-binding domain 810 917 IPR001433 GO:0016491
Csa04g01830 935 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 679 791 IPR017927 GO:0016491
Csa04g01830 935 Pfam Oxidoreductase FAD-binding domain 684 790 IPR008333 -
Csa04g01830 935 Gene3D - 561 641 IPR036400 -
Csa04g01830 935 SUPERFAMILY Riboflavin synthase domain-like 671 793 IPR017938 -
Csa04g01830 935 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 120 381 IPR036374 -
Csa04g01830 935 CDD cyt_b5_reduct_like 684 927 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 731 738 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 776 790 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 903 911 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 809 828 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 847 858 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 710 721 - -
Csa04g01830 935 Gene3D Translation factors 672 785 - -
Csa04g01830 935 PRINTS Cytochrome B5 signature 615 622 IPR001199 -
Csa04g01830 935 PRINTS Cytochrome B5 signature 600 614 IPR001199 -
Csa04g01830 935 PRINTS Cytochrome B5 signature 590 600 IPR001199 -
Csa04g01830 935 PRINTS Cytochrome B5 signature 627 639 IPR001199 -
Csa04g01830 935 PANTHER NADH-CYTOCHROME B5 REDUCTASE 98 935 IPR001834 GO:0016491
Csa04g01830 935 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 565 640 IPR001199 -
Csa04g01830 935 Pfam Oxidoreductase molybdopterin binding domain 172 351 IPR000572 -
Csa04g01830 935 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 189 224 IPR022407 GO:0043546
Csa04g01830 935 Pfam Mo-co oxidoreductase dimerisation domain 380 509 IPR005066 GO:0016491|GO:0030151
Csa04g01830 935 Gene3D - 786 935 IPR039261 -
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 835 844 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 903 911 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 847 858 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 731 738 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 599 609 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 809 828 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 879 895 IPR001709 GO:0016491
Csa04g01830 935 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 596 603 IPR018506 GO:0020037
Csa04g01830 935 PANTHER NITRATE REDUCTASE 98 935 - -
Csa04g01830 935 PIRSF Nitr_rd_NADH 56 934 IPR012137 GO:0006809|GO:0042128|GO:0050464
Csa04g01830 935 Gene3D - 125 373 IPR036374 -
Csa04g01830 935 SUPERFAMILY E set domains 383 508 IPR014756 -
Csa04g01830 935 CDD eukary_NR_Moco 123 508 - -
Csa04g01830 935 SMART Cyt_b5_2 568 640 IPR001199 -
Csa04g01830 935 Pfam Cytochrome b5-like Heme/Steroid binding domain 571 639 IPR001199 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03663 Csa04g01830 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02595 Csa-Chr2:22592219 Csa04g01830 Csa-Chr4:17957732 3.90E-59 dispersed
Csa04g01830 Csa-Chr4:17957732 Csa05g01516 Csa-Chr5:17677296 0 dispersed
Csa06g02086 Csa-Chr6:18617774 Csa04g01830 Csa-Chr4:17957732 2.23E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01830 K10534 - csv:101216001 1800.02