Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00898 ATGTCCTCCGAAGACATCAATGGCCTCAACTCCCACCTCGTCTTCCAAGACGAATCCCTCCCTTTCAATTGCTCCTCCACCCCCCATCGTCGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGCCGTCGACCGTGACCGATTCTTTTCCCAACAGGGTGAGGATTTCCGCCGGAATGTGTTCGGTCACAACCGGAATTGGAATGGGACTGCGAGAACTGGAAGTGAGGAAGGATCGGATGAGGAGGAGGAGGAGGAGGACGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGGTGTTAAAGGGCTTGTTTCTTTGGATGATGTTAATAAGTGTAGTAAAACTGCTAACCCCATTTGCAGTAACAATGATAGAAGTGATCAGAGTAGTGGGGGGTTGAAGAATGGGACAGACAAATTGGGAAATGGGAAGCGTAAGCAGCATTCTTCTTTTGTCAAAGATGCTTTGGCTGGGTCTTCCGGAGTAACTCAGAGTGAAAACAATCCGCAGGGAAGGCTAGGGAATTATCCAAATGCGGTTACAGCTGCAGAGCCTGATAGTGAAGCTTATTATTCTCAGTATTTGCAAAGCAATGAAGGCTCTGCTTCTGAGCAGAAGGATTTGAGTATCGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGTTTTCAGGAGAGCCTAGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGTGCTCTCATGGACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGATTAAAATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGCGAAGAAGAATTATTATTTTACCACTCACCGAAACGGAGAAGGGAGAGGTTTGAGCAGGAAAAGGGTGGTTATGGTGATTTGACGCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCCTTTGCGGTGACAGATAGGGTAATTATTAAGGGGAACAAGAGGACGCCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCACTTGCAAAGGTTCAAAATGATGCAACATCAAAGATGATAACAAGGAAGATGATGCCAAATTGGCTCTAG 1278 47.34 MSSEDINGLNSHLVFQDESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPAVDRDRFFSQQGEDFRRNVFGHNRNWNGTARTGSEEGSDEEEEEEDDDDDEDEVDDGDDGVKGLVSLDDVNKCSKTANPICSNNDRSDQSSGGLKNGTDKLGNGKRKQHSSFVKDALAGSSGVTQSENNPQGRLGNYPNAVTAAEPDSEAYYSQYLQSNEGSASEQKDLSIENGCGFGRRDVSFSGEPRESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRLKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYHSPKRRRERFEQEKGGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVQNDATSKMITRKMMPNWL* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6968132 6972180 - CsaV3_5G010960.1 Csa05g00898 529285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00898 425 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 42 425 - -
Csa05g00898 425 MobiDBLite consensus disorder prediction 166 188 - -
Csa05g00898 425 MobiDBLite consensus disorder prediction 71 192 - -
Csa05g00898 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 314 IPR013083 -
Csa05g00898 425 MobiDBLite consensus disorder prediction 88 110 - -
Csa05g00898 425 ProSiteProfiles U-box domain profile. 243 315 IPR003613 GO:0004842|GO:0016567
Csa05g00898 425 MobiDBLite consensus disorder prediction 123 149 - -
Csa05g00898 425 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 42 425 - -
Csa05g00898 425 SUPERFAMILY RING/U-box 242 316 - -
Csa05g00898 425 MobiDBLite consensus disorder prediction 20 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04155 Csa-Chr3:36514717 Csa05g00898 Csa-Chr5:6968132 0 dispersed
Csa05g00898 Csa-Chr5:6968132 Csa05g01011 Csa-Chr5:9559126 2.89E-43 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00898 - - csv:101218241 801.971