Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00679 | ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA | 714 | 45.66 | MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSYSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG* | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5555910 | 5558007 | - | CsaV3_6G006790.1 | Csa06g00679 | 532306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00679 | 237 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
Csa06g00679 | 237 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
Csa06g00679 | 237 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Csa06g00679 | 237 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Csa06g00679 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Csa06g00679 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 237 | - | - | |
Csa06g00679 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 1 | 237 | - | - | |
Csa06g00679 | 237 | MobiDBLite | consensus disorder prediction | 116 | 135 | - | - | |
Csa06g00679 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Csa06g00679 | 237 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Csa06g00679 | 237 | CDD | Bbox1_BBX-like | 56 | 98 | - | - | |
Csa06g00679 | 237 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00821 | Csa-Chr4:5753161 | Csa06g00679 | Csa-Chr6:5555910 | 1.50E-45 | dispersed | |
Csa06g00679 | Csa-Chr6:5555910 | Csa07g00027 | Csa-Chr7:395757 | 2.02E-33 | dispersed | |
Csa06g00679 | Csa-Chr6:5555910 | Csa02g02104 | Csa-Chr2:19152113 | 1.03E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31940 | PF00643 | zf-B_box | 5.20E-08 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00679 | - | - | csv:101215327 | 472.241 |