Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00679 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 45.66 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSYSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG* 238
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5555910 5558007 - CsaV3_6G006790.1 Csa06g00679 532306
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00679 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Csa06g00679 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Csa06g00679 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Csa06g00679 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa06g00679 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa06g00679 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Csa06g00679 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Csa06g00679 237 MobiDBLite consensus disorder prediction 116 135 - -
Csa06g00679 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Csa06g00679 237 CDD Bbox1_BBX-like 5 47 - -
Csa06g00679 237 CDD Bbox1_BBX-like 56 98 - -
Csa06g00679 237 Gene3D Classic Zinc Finger 1 92 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00821 Csa-Chr4:5753161 Csa06g00679 Csa-Chr6:5555910 1.50E-45 dispersed
Csa06g00679 Csa-Chr6:5555910 Csa07g00027 Csa-Chr7:395757 2.02E-33 dispersed
Csa06g00679 Csa-Chr6:5555910 Csa02g02104 Csa-Chr2:19152113 1.03E-37 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31940 PF00643 zf-B_box 5.20E-08 No_clan Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00679 - - csv:101215327 472.241