Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01141 ATGCCCTTAACCTGGTTGAGCAATATGGGTAGCCGGGTCAGCTCGTCGGCTAAACGGAGCAACGGCGGTGTAAAGAGTGGAAAAACGGGTGGCGTAGGGAAAGAAGCGTCGGTTAAGAAGAGTGACAGCGGCGGGGGAGGAAGTAGTCGTGGGAAGTCGTTGTGGCGGCCTGAGACGAAGGTTAATTTTCCGAAGAAATATGGTTTCATAGCGGATAACTTCTCCTCTGTTGACCAGGTTACCTCCGCATTGAGGAAAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAATGGACAGGTGCAGTATCCTTCAATAAACGGAGCTTGCACGCCCTTTCCGATTCTCCTAATCCCTACCAGAAGGCTCTGTCCATCATCGGGAAAACTCTGGCTCCCTTCGATGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGTGACGCTACGACGCACGATCAATTGGTGTTCAGTTTTCACAATGACAATTCACCATGCCATGGATTTGAAGAAGTTCTTGACTGTTACAAAAACATAATTCCCAATGCTCAACTTTCAGGACCAACTTCTTACGGTCCTGTTGTTGAAGCTGCAATGGATATCGTGGAGAAGAGTGGTGGCCAATTTCATATTCTTCTCATTGTTGCTGACGGACAGGTTACTCGAAGCTCCCTTTTTCGCGATGGTGAATTGAGCGCTCAAGAGGAGAAAACAATCAAAGCAATTGTGGATGCAAGTGCATATCCTCTTTCAATCATTCTGGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTTGATGACAAGATTCCAGCTCGCGATTTCGATAATTTCCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAACATTGGCGTGGCGGAAAAAGAAGCAGCTTTTGCTTTAGCTGCATTAATGGAGGTTCCTTTCCAGTACAAAGCAGTCACAGAAATGGGTCTTATGGGACGTGTGACAGGGAAAGCAAGACATATTGTGCCACGACCCCCACCGACATGTTATACTCGTTCTACACGACTTACTTCTACACCAAGCGACACCTCCTCAACTTCTGCATCTGATGAACATAGTCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTTGGATGCGGCCACATGACTTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGTCAGCCTATCAGAAACCGAATAAGGCTGTATACTGGGTGA 1260 46.83 MPLTWLSNMGSRVSSSAKRSNGGVKSGKTGGVGKEASVKKSDSGGGGSSRGKSLWRPETKVNFPKKYGFIADNFSSVDQVTSALRKEGLESSNLIVGIDFTKSNEWTGAVSFNKRSLHALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQLVFSFHNDNSPCHGFEEVLDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSLFRDGELSAQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNIGVAEKEAAFALAALMEVPFQYKAVTEMGLMGRVTGKARHIVPRPPPTCYTRSTRLTSTPSDTSSTSASDEHSQVCPICLTAGKDLAFGCGHMTCRECGSRLSNCHICRQPIRNRIRLYTG* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9497206 9506310 + CsaV3_6G013390.1 Csa06g01141 532768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01141 419 MobiDBLite consensus disorder prediction 348 368 - -
Csa06g01141 419 SMART VWA_4 91 294 IPR002035 -
Csa06g01141 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 418 IPR013083 -
Csa06g01141 419 ProSiteProfiles Zinc finger RING-type profile. 374 407 IPR001841 -
Csa06g01141 419 MobiDBLite consensus disorder prediction 1 23 - -
Csa06g01141 419 MobiDBLite consensus disorder prediction 1 55 - -
Csa06g01141 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 49 418 - -
Csa06g01141 419 CDD RING-HC_RGLG_plant 373 417 IPR045317 GO:0061630|GO:0070534
Csa06g01141 419 Pfam Zinc finger, C3HC4 type (RING finger) 372 411 - -
Csa06g01141 419 MobiDBLite consensus disorder prediction 347 368 - -
Csa06g01141 419 SUPERFAMILY vWA-like 93 274 IPR036465 -
Csa06g01141 419 Pfam Copine 116 329 IPR010734 -
Csa06g01141 419 PANTHER COPINE FAMILY PROTEIN 1 49 418 - -
Csa06g01141 419 SUPERFAMILY RING/U-box 370 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02262 Csa-Chr5:25249531 Csa06g01141 Csa-Chr6:9497206 1.52E-155 dispersed
Csa06g01141 Csa-Chr6:9497206 Csa06g02741 Csa-Chr6:23950544 1.27E-154 dispersed
Csa06g01141 Csa-Chr6:9497206 Csa05g01880 Csa-Chr5:22018130 6.54E-157 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01141 K16280 - csv:101218058 794.267