Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01165 ATGCATATGGAGAATTTATCTTCTAGTGATCCATCACATTCGGCAATGTATGAAAATAGTGATTCGAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAGGAATTTTCACCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGCAAATCATACTGTACATTTCTTCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCAATAATTTTTTGCCATAGGTTCTTTCTTCGGCAATCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTTGAAGAAACCCCTCGCCCGTTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCTTACAAACCCCTTGTTGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAAGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGGTTACCACCTTCTGGTGAAGCTGAGGGAAGCATTGGAGGTGGTCCTACTAATCAAACCCCTACAAAAGCTCCCACCAACAGCGAAGAACGCGCCATAGTAGACAATCATGCACTTGGTGTAGGTATTGCTACCTCAAGGCTTGGAACCTCAAAAGCTGGTTCATCTAGGCCAGCATCTGAACACTCATTTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAATGTAGATTTTAGAAGTCCTTCCAATCATAAAACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACACTCAAAACTCACTAAAGCATCAGTCAGAGGGATTGGCTGAGCAAGACCACGGAAATGATATGAAAATGAATGAAGCAGCGTCAAGGGATGCAATGGAATTGAAAGACAAACATGTAATTCGAAATATGGATTTTAGAGAAGTTACACTCGGCAAATCTCAGGACGTTATCAAAAAGATCGACAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAAGCAAAGTTGGAATAAGTCATCAAATAAACAAGAATATGATGATTTGTATCGAGAGGACGATAAAGAGGAGCATCCTCAACGAACACGGCAGTCGTCATATAATCTAGACTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTCAGTTATGGGTATCAAGATTCCCCCAAGTCAAACAGCCGTAAGAGAGGCAGGGAGCTCACAGGATAA 1716 42.07 MHMENLSSSDPSHSAMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEAEGSIGGGPTNQTPTKAPTNSEERAIVDNHALGVGIATSRLGTSKAGSSRPASEHSFAGDQPSRAMQNHSIESSNVDFRSPSNHKTGSESKVRQEMEPSAFHDKGNTQNSLKHQSEGLAEQDHGNDMKMNEAASRDAMELKDKHVIRNMDFREVTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQKQSWNKSSNKQEYDDLYREDDKEEHPQRTRQSSYNLDSSNIEEGEFANANEVSYGYQDSPKSNSRKRGRELTG* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9773091 9783770 + CsaV3_6G013630.1 Csa06g01165 532792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01165 571 MobiDBLite consensus disorder prediction 529 559 - -
Csa06g01165 571 SUPERFAMILY Cyclin-like 32 177 IPR036915 -
Csa06g01165 571 Pfam Cyclin, N-terminal domain 36 176 IPR006671 -
Csa06g01165 571 Gene3D - 26 175 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 274 300 - -
Csa06g01165 571 SMART cyclin_7 182 267 IPR013763 -
Csa06g01165 571 SMART cyclin_7 67 169 IPR013763 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 320 362 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 509 528 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 487 571 - -
Csa06g01165 571 CDD CYCLIN 176 237 IPR013763 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 363 379 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 319 404 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 1 31 - -
Csa06g01165 571 PIRSF Cyclin_L 477 570 - -
Csa06g01165 571 PIRSF Cyclin_L 33 479 - -
Csa06g01165 571 SUPERFAMILY Cyclin-like 178 274 IPR036915 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g01165 571 Gene3D - 177 277 - -
Csa06g01165 571 PANTHER - 3 517 - -
Csa06g01165 571 CDD CYCLIN 61 132 IPR013763 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 380 394 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 487 503 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 284 300 - -
Csa06g01165 571 PANTHER CYCLIN 3 517 IPR043198 GO:0006357|GO:0016538
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02779 Csa-Chr1:24520738 Csa06g01165 Csa-Chr6:9773091 2.76E-39 dispersed
Csa01g03553 Csa-Chr1:32689848 Csa06g01165 Csa-Chr6:9773091 0 dispersed
Csa02g01653 Csa-Chr2:15678918 Csa06g01165 Csa-Chr6:9773091 9.74E-22 dispersed
Csa02g02077 Csa-Chr2:18958082 Csa06g01165 Csa-Chr6:9773091 1.03E-119 dispersed
Csa06g01165 Csa-Chr6:9773091 Csa06g02439 Csa-Chr6:21769184 2.40E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01165 K15188 - csv:101220862 1129.39