Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03846 | ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCCGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCGGTCATAAATGGACTAAATCAATCAACCCCAAATCAGTATGTAGCGTCTCCCCAAGTTGGAGCAGGACATTCTATGGTACCCCCGGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGGATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTACACGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAAAATCATCAAAATGAGGTGGCATCAGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGATAGAAGTGATCTTGCTTCTTCAGAGAACTGA | 609 | 42.53 | MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQSTPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN* | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30524534 | 30535503 | - | CsaV3_6G052320.1 | Csa06g03846 | 535473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03846 | 202 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Csa06g03846 | 202 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 110 | 165 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g03846 | 202 | MobiDBLite | consensus disorder prediction | 23 | 47 | - | - | |
Csa06g03846 | 202 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 113 | 133 | IPR018362 | GO:0003677|GO:0016602 | |
Csa06g03846 | 202 | Gene3D | - | 108 | 169 | - | - | |
Csa06g03846 | 202 | ProSiteProfiles | NF-YA/HAP2 family profile. | 108 | 168 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g03846 | 202 | MobiDBLite | consensus disorder prediction | 163 | 202 | - | - | |
Csa06g03846 | 202 | SMART | cbf3 | 107 | 168 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g03846 | 202 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 1 | 183 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g03846 | 202 | MobiDBLite | consensus disorder prediction | 168 | 202 | - | - | |
Csa06g03846 | 202 | PRINTS | CCAAT-binding transcription factor subunit B signature | 111 | 133 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g03846 | 202 | PRINTS | CCAAT-binding transcription factor subunit B signature | 142 | 165 | IPR001289 | GO:0003700|GO:0006355 | |
Csa06g03846 | 202 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 1 | 183 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01062 | Csa-Chr4:8513729 | Csa06g03846 | Csa-Chr6:30524534 | 5.67E-34 | dispersed | |
Csa06g03846 | Csa-Chr6:30524534 | Csa07g02013 | Csa-Chr7:19647054 | 1.08E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32216 | PF02045 | CBFB_NFYA | 4.10E-26 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03846 | K08064 | - | csv:101205549 | 392.119 |