Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03846 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCCGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCGGTCATAAATGGACTAAATCAATCAACCCCAAATCAGTATGTAGCGTCTCCCCAAGTTGGAGCAGGACATTCTATGGTACCCCCGGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGGATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTACACGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAAAATCATCAAAATGAGGTGGCATCAGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGATAGAAGTGATCTTGCTTCTTCAGAGAACTGA 609 42.53 MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQSTPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN* 203
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 30524534 30535503 - CsaV3_6G052320.1 Csa06g03846 535473
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03846 202 MobiDBLite consensus disorder prediction 1 51 - -
Csa06g03846 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 MobiDBLite consensus disorder prediction 23 47 - -
Csa06g03846 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Csa06g03846 202 Gene3D - 108 169 - -
Csa06g03846 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 MobiDBLite consensus disorder prediction 163 202 - -
Csa06g03846 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 183 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 MobiDBLite consensus disorder prediction 168 202 - -
Csa06g03846 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 183 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01062 Csa-Chr4:8513729 Csa06g03846 Csa-Chr6:30524534 5.67E-34 dispersed
Csa06g03846 Csa-Chr6:30524534 Csa07g02013 Csa-Chr7:19647054 1.08E-41 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32216 PF02045 CBFB_NFYA 4.10E-26 No_clan Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03846 K08064 - csv:101205549 392.119