Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0459 ATGGATTTCGAAGAACAAGACGAACACGAAGAAGAAGAGATGGAGATGGTGGCCGCGAGCTACGACTCCCTCGGCAACAACTCAACTCCGCGGGTCAAAATGCCGAGCAATGAGCAGGGCCATCGGAAGCCACGTTACAGGGAGTGTTTAAAGAATCACGCAGTCGGGCTCGGCGGCCACGCTCTAGACGGCTGCGGAGAGTTTCTCGCAGCTGGCGCTGAAGGCACGCTCGACGGTCTCAAATGCGCAGCGTGTAACTGCCACCGTAACTTCCACCGAAAAGAGACCGATACAGGAGCCGGTCTGGGAGAGCCATTTCTACTTCCTCATCATCCTCATCCACATCCACAGTTAATCTCTCCTTACTATAGAACCCCGGCAGGGTACCTCCACGTGGCGCCACATCATAGGCCGCTGGCTCTGCCTTCAACGTCCGGCGGCGGCGGGACACATAGTAGGGAGGATCAGGAAGACATGTCAAACCCTAGCGGTGGAGGAGGAAGTAGTTTAGGAAAGAAGAGACATAGAACGAAGTTTACGCAAGAACAGAAAGATAGAATGCTGGGATTGGCTGAAACACTTGGATGGAGGATTCAGAAACATGATGAAGCTGTGGTGCAGCAATTCTGCAACGAGACAGGAGTGAAGCGTCATGTTCTTAAAGTTTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAG 708 52.4 MDFEEQDEHEEEEMEMVAASYDSLGNNSTPRVKMPSNEQGHRKPRYRECLKNHAVGLGGHALDGCGEFLAAGAEGTLDGLKCAACNCHRNFHRKETDTGAGLGEPFLLPHHPHPHPQLISPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREDQEDMSNPSGGGGSSLGKKRHRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNETGVKRHVLKVWMHNNKHTLGKKP 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 33591762 33592469 - evm.model.ptg000014l.749 HCH14g0459 558362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0459 235 NCBIfam homeobox domain, ZF-HD class 172 228 IPR006455 -
HCH14g0459 235 MobiDBLite consensus disorder prediction 1 42 - -
HCH14g0459 235 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
HCH14g0459 235 MobiDBLite consensus disorder prediction 1 17 - -
HCH14g0459 235 MobiDBLite consensus disorder prediction 137 183 - -
HCH14g0459 235 SUPERFAMILY Homeodomain-like 162 233 IPR009057 -
HCH14g0459 235 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
HCH14g0459 235 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 231 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
HCH14g0459 235 MobiDBLite consensus disorder prediction 21 35 - -
HCH14g0459 235 FunFam Zinc-finger homeodomain protein 2 160 233 - -
HCH14g0459 235 Gene3D - 156 233 - -
HCH14g0459 235 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0459 HCH-Chr14:33591762 HCH1g0163 HCH-Chr1:12945090 8.70E-46 dispersed
HCH14g0459 HCH-Chr14:33591762 HCH4g0254 HCH-Chr4:1570917 2.00E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32943 PF04770 ZF-HD_dimer 5.50E-28 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0459 - - - 0.0