Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g0459 | ATGGATTTCGAAGAACAAGACGAACACGAAGAAGAAGAGATGGAGATGGTGGCCGCGAGCTACGACTCCCTCGGCAACAACTCAACTCCGCGGGTCAAAATGCCGAGCAATGAGCAGGGCCATCGGAAGCCACGTTACAGGGAGTGTTTAAAGAATCACGCAGTCGGGCTCGGCGGCCACGCTCTAGACGGCTGCGGAGAGTTTCTCGCAGCTGGCGCTGAAGGCACGCTCGACGGTCTCAAATGCGCAGCGTGTAACTGCCACCGTAACTTCCACCGAAAAGAGACCGATACAGGAGCCGGTCTGGGAGAGCCATTTCTACTTCCTCATCATCCTCATCCACATCCACAGTTAATCTCTCCTTACTATAGAACCCCGGCAGGGTACCTCCACGTGGCGCCACATCATAGGCCGCTGGCTCTGCCTTCAACGTCCGGCGGCGGCGGGACACATAGTAGGGAGGATCAGGAAGACATGTCAAACCCTAGCGGTGGAGGAGGAAGTAGTTTAGGAAAGAAGAGACATAGAACGAAGTTTACGCAAGAACAGAAAGATAGAATGCTGGGATTGGCTGAAACACTTGGATGGAGGATTCAGAAACATGATGAAGCTGTGGTGCAGCAATTCTGCAACGAGACAGGAGTGAAGCGTCATGTTCTTAAAGTTTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAG | 708 | 52.4 | MDFEEQDEHEEEEMEMVAASYDSLGNNSTPRVKMPSNEQGHRKPRYRECLKNHAVGLGGHALDGCGEFLAAGAEGTLDGLKCAACNCHRNFHRKETDTGAGLGEPFLLPHHPHPHPQLISPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREDQEDMSNPSGGGGSSLGKKRHRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNETGVKRHVLKVWMHNNKHTLGKKP | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 33591762 | 33592469 | - | evm.model.ptg000014l.749 | HCH14g0459 | 558362 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g0459 | 235 | NCBIfam | homeobox domain, ZF-HD class | 172 | 228 | IPR006455 | - | |
HCH14g0459 | 235 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
HCH14g0459 | 235 | Pfam | ZF-HD protein dimerisation region | 45 | 96 | IPR006456 | - | |
HCH14g0459 | 235 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
HCH14g0459 | 235 | MobiDBLite | consensus disorder prediction | 137 | 183 | - | - | |
HCH14g0459 | 235 | SUPERFAMILY | Homeodomain-like | 162 | 233 | IPR009057 | - | |
HCH14g0459 | 235 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 45 | 95 | IPR006456 | - | |
HCH14g0459 | 235 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 29 | 231 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
HCH14g0459 | 235 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
HCH14g0459 | 235 | FunFam | Zinc-finger homeodomain protein 2 | 160 | 233 | - | - | |
HCH14g0459 | 235 | Gene3D | - | 156 | 233 | - | - | |
HCH14g0459 | 235 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 46 | 95 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0459 | HCH-Chr14:33591762 | HCH1g0163 | HCH-Chr1:12945090 | 8.70E-46 | dispersed | |
HCH14g0459 | HCH-Chr14:33591762 | HCH4g0254 | HCH-Chr4:1570917 | 2.00E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32943 | PF04770 | ZF-HD_dimer | 5.50E-28 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g0459 | - | - | - | 0.0 |