Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1292 ATGTCTAATTCTCGAGCTCCTAACTCTTCTTCGCTTCCGTCGGAGAAGATCATGCAGCCTTTGAAACGGCAGCTTCCGTTTTCTTCTATGAAACCTCCGTTTGCATCTCCTGCTGACTATCACCGCTTCGCTTCGGAACCTAGACTGTCCGATCAGGAACCTGAGGTCATTGTAGTGAAATCTCCGCAGTTAAAGCGGAAGAGTGAGGTTGCAGATTATGAAGCTGAGTCCACTGAAAGGGCAGCTGGTCCTGGATTTGCTGAGGTAGTTAACAGTTCCCATCAAACACCTGTATCTATGAAAGGAGGAAAGGGAAACAAATCAAGGCTAACTAAGTGCAGTAGATCAGGGCCACAAACTCCCATGTCAAATGTTGGTTCACCTTCTGGAAACAACCTTACCCCAGCTGGTCCATGTCGCTATGATAGTTCTCTCGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCAGAAGATGGTATGCTTGATCTAAATAAAGCAGCCGACACATTGGAGGTGCAAAAGAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTAATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCGAGGCCAGGGGATGTTGATGACAATTATGCCGGTCTACAGGCAGAAATAGAAAAACTATCTATTGAAGAACACAGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTGAGGGATCTCAGTGAAGATGAGAACAATCAAAGGTGGCTTTTTGTTACTGAGGAAGACATCAAGGGTCTGCCCTGTTTTGAGAATGAAACTCTCATAGCTATTAAAGCTCCGCACGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTATCCCCAGAGGAGATACAAGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGCTTGAAGATATCAATGATGTGGAAGTTCCTCCAAGCTTGCCGTCAAGTTCAGGATTTAATGAGACACTTGCGACGACGGTGGTTATGGAGGATAGCAGAGGGAAGGAACTTGAAATGCGAGAGCAAGATGTTCACAGAATGTGCTCGGATCTAAATGCATCCCAGGACTTTGTGGGTGGTATCATGAAAATTGTCCCCTCGGTAGTTGACAGTGATGCTGATTACTGGCTCTCGTCTGATGCCGATGTTAGTATCACCGACATGTGGAGAACAGAACCTGGGTTTGAGTGGAACGAACTGGGTACGCTTCATGAAGATTACAGTACAGTCAATGTCCACACGCCCACACCGCAAACCCAGAATCTACTACCCAATAATGCACCTGAAGTGCCTTCTTCTGCTAATCCTACTGGCAGCTGA 1398 44.92 MSNSRAPNSSSLPSEKIMQPLKRQLPFSSMKPPFASPADYHRFASEPRLSDQEPEVIVVKSPQLKRKSEVADYEAESTERAAGPGFAEVVNSSHQTPVSMKGGKGNKSRLTKCSRSGPQTPMSNVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEIEKLSIEEHRLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFENETLIAIKAPHGTTLEVPDPDEAVDYPQRRYKIVLRSTMGPIDVYLVSQFEEKLEDINDVEVPPSLPSSSGFNETLATTVVMEDSRGKELEMREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLSSDADVSITDMWRTEPGFEWNELGTLHEDYSTVNVHTPTPQTQNLLPNNAPEVPSSANPTGS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55039466 55044149 - evm.model.ptg000010l.212 HCH2g1292 540517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1292 465 Coils Coil 156 176 - -
HCH2g1292 465 Gene3D - 212 322 - -
HCH2g1292 465 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH2g1292 465 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
HCH2g1292 465 Gene3D - 134 207 IPR036388 -
HCH2g1292 465 MobiDBLite consensus disorder prediction 109 133 - -
HCH2g1292 465 FunFam E2F transcription factor 1 134 207 - -
HCH2g1292 465 MobiDBLite consensus disorder prediction 1 57 - -
HCH2g1292 465 Coils Coil 218 255 - -
HCH2g1292 465 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH2g1292 465 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH2g1292 465 MobiDBLite consensus disorder prediction 91 133 - -
HCH2g1292 465 MobiDBLite consensus disorder prediction 1 17 - -
HCH2g1292 465 MobiDBLite consensus disorder prediction 438 465 - -
HCH2g1292 465 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
HCH2g1292 465 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
HCH2g1292 465 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1292 HCH-Chr2:55039466 HCH4g0786 HCH-Chr4:5086366 4.80E-56 dispersed
HCH2g1292 HCH-Chr2:55039466 HCH9g0455 HCH-Chr9:2913522 9.20E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33252 PF16421 E2F_CC-MB 1.30E-35 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1292 K06620 - csv:101219318 781.941