Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g0446 | ATGCAGTCGAAGTCTGACACCAACAATCAACTCGAATCCGATCCAAATGGTGTTCCATCGACGAATATTTATTATGAACCCTGGTGGCGAGGCATTGGGTACAATCCTATTCCACTACCTGTGGTAGGGGGGAATGCTTCCAACTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCGAATAATGACTTGAACGAGGAAGAAGATGATGTCACTAAAGAAGTGCAATCTAATGGATCTCCACATTCAGCTGGAAGCTACGGACAGGATGCTCAGAAGATGCAGCATGTTTCAGGCACTCTGCCAGCTATGCATGGTGAATGTCTGACACAGTCTACACAACTTGAACTTGTTGGTCACTCCATTGCATGTGCAGGAAATCCATATCAGGACCCATATTATGGAGGAATGATGGCTGTTTATGGGCATCAGCCCTTGGGTTATCCTATTGTTGGAGCACCACATGCTAGGATGCCGTTGCCCCTAGAGATAGCACAAGACCCTGTTTTTGTGAATGCTAAGCAATACCAAGGAATTTTGAGGCGGAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAGGAAGCTGATAAAAGCCAGAAAGCCGTACCTTCATGAATCTAGACACCAGCATGCCATAAGGAGGAGTAGGGGTACTGGAGGACGTTTTGCCAAGAAAGGTGAAGCTACTGGAGAAGAGATGCATGTTGATAAAGTAAAGGACAGTGGTTACCGCCTAAATGACCGTTCCGATCAGCAGAACGGAAGCTCCTCGATATATAATGCTTCTCAGTAG | 816 | 46.57 | MQSKSDTNNQLESDPNGVPSTNIYYEPWWRGIGYNPIPLPVVGGNASNSTSLEFPNGGSESNDGQSVSNNDLNEEEDDVTKEVQSNGSPHSAGSYGQDAQKMQHVSGTLPAMHGECLTQSTQLELVGHSIACAGNPYQDPYYGGMMAVYGHQPLGYPIVGAPHARMPLPLEIAQDPVFVNAKQYQGILRRRQARAKAEAERKLIKARKPYLHESRHQHAIRRSRGTGGRFAKKGEATGEEMHVDKVKDSGYRLNDRSDQQNGSSSIYNASQ | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 39553871 | 39556797 | - | evm.model.ptg000008l.1089 | HCH8g0446 | 549544 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g0446 | 271 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 176 | 230 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 211 | 271 | - | - | |
HCH8g0446 | 271 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 178 | 198 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 39 | 102 | - | - | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 255 | 271 | - | - | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 211 | 227 | - | - | |
HCH8g0446 | 271 | ProSiteProfiles | NF-YA/HAP2 family profile. | 173 | 233 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 84 | 102 | - | - | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
HCH8g0446 | 271 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 17 | 260 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
HCH8g0446 | 271 | MobiDBLite | consensus disorder prediction | 233 | 254 | - | - | |
HCH8g0446 | 271 | Gene3D | - | 173 | 235 | - | - | |
HCH8g0446 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 207 | 230 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0446 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 176 | 198 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH8g0446 | 271 | SMART | cbf3 | 172 | 233 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g1124 | HCH-Chr14:38158728 | HCH8g0446 | HCH-Chr8:39553871 | 1.60E-26 | dispersed | |
HCH4g1200 | HCH-Chr4:8039548 | HCH8g0446 | HCH-Chr8:39553871 | 2.60E-32 | dispersed | |
HCH8g0446 | HCH-Chr8:39553871 | HCH9g1106 | HCH-Chr9:13339242 | 8.30E-32 | dispersed | |
HCH10g0556 | HCH-Chr10:4471161 | HCH8g0446 | HCH-Chr8:39553871 | 3.50E-27 | transposed | |
HCH2g1368 | HCH-Chr2:55522863 | HCH8g0446 | HCH-Chr8:39553871 | 3.40E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33996 | PF02045 | CBFB_NFYA | 7.40E-26 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g0446 | K08064 | - | csv:101212860 | 454.521 |