Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g0446 ATGCAGTCGAAGTCTGACACCAACAATCAACTCGAATCCGATCCAAATGGTGTTCCATCGACGAATATTTATTATGAACCCTGGTGGCGAGGCATTGGGTACAATCCTATTCCACTACCTGTGGTAGGGGGGAATGCTTCCAACTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCGAATAATGACTTGAACGAGGAAGAAGATGATGTCACTAAAGAAGTGCAATCTAATGGATCTCCACATTCAGCTGGAAGCTACGGACAGGATGCTCAGAAGATGCAGCATGTTTCAGGCACTCTGCCAGCTATGCATGGTGAATGTCTGACACAGTCTACACAACTTGAACTTGTTGGTCACTCCATTGCATGTGCAGGAAATCCATATCAGGACCCATATTATGGAGGAATGATGGCTGTTTATGGGCATCAGCCCTTGGGTTATCCTATTGTTGGAGCACCACATGCTAGGATGCCGTTGCCCCTAGAGATAGCACAAGACCCTGTTTTTGTGAATGCTAAGCAATACCAAGGAATTTTGAGGCGGAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAGGAAGCTGATAAAAGCCAGAAAGCCGTACCTTCATGAATCTAGACACCAGCATGCCATAAGGAGGAGTAGGGGTACTGGAGGACGTTTTGCCAAGAAAGGTGAAGCTACTGGAGAAGAGATGCATGTTGATAAAGTAAAGGACAGTGGTTACCGCCTAAATGACCGTTCCGATCAGCAGAACGGAAGCTCCTCGATATATAATGCTTCTCAGTAG 816 46.57 MQSKSDTNNQLESDPNGVPSTNIYYEPWWRGIGYNPIPLPVVGGNASNSTSLEFPNGGSESNDGQSVSNNDLNEEEDDVTKEVQSNGSPHSAGSYGQDAQKMQHVSGTLPAMHGECLTQSTQLELVGHSIACAGNPYQDPYYGGMMAVYGHQPLGYPIVGAPHARMPLPLEIAQDPVFVNAKQYQGILRRRQARAKAEAERKLIKARKPYLHESRHQHAIRRSRGTGGRFAKKGEATGEEMHVDKVKDSGYRLNDRSDQQNGSSSIYNASQ 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39553871 39556797 - evm.model.ptg000008l.1089 HCH8g0446 549544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g0446 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 MobiDBLite consensus disorder prediction 211 271 - -
HCH8g0446 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
HCH8g0446 271 MobiDBLite consensus disorder prediction 39 102 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 255 271 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 42 69 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 1 20 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 211 227 - -
HCH8g0446 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 MobiDBLite consensus disorder prediction 84 102 - -
HCH8g0446 271 MobiDBLite consensus disorder prediction 1 22 - -
HCH8g0446 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 260 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH8g0446 271 MobiDBLite consensus disorder prediction 233 254 - -
HCH8g0446 271 Gene3D - 173 235 - -
HCH8g0446 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH8g0446 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1124 HCH-Chr14:38158728 HCH8g0446 HCH-Chr8:39553871 1.60E-26 dispersed
HCH4g1200 HCH-Chr4:8039548 HCH8g0446 HCH-Chr8:39553871 2.60E-32 dispersed
HCH8g0446 HCH-Chr8:39553871 HCH9g1106 HCH-Chr9:13339242 8.30E-32 dispersed
HCH10g0556 HCH-Chr10:4471161 HCH8g0446 HCH-Chr8:39553871 3.50E-27 transposed
HCH2g1368 HCH-Chr2:55522863 HCH8g0446 HCH-Chr8:39553871 3.40E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33996 PF02045 CBFB_NFYA 7.40E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g0446 K08064 - csv:101212860 454.521