Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0232 ATGGCTTTTCTCTTTTTTTTCCCTCGAATTTCTCCTCCATCTTCCATTTTTGCTTCTGGGTTTCTTCCGGAGCTTGCGTTTATGGGTTCTGTTCATGGGTTTTGTTTCTGGGTTTCTTTTGGAGCTTGCGTTTCTGGGGTTTTGGCGAAGATGGCTGATGGTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGTGGCGAGCAGAGTCCGAGGTCTTGTGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGAAAAATTGCTAAGGATGCTAAGGAGACCGTACAAGAATGTGTATCCGAGTTCATCAGTTTTATTACCAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAAACGATTAATGGAGATGATTTACTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATGGATCCGCTGAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCCTCTAAGAAAGAAGCTCATCCAACCCCTATTTCTCAGATGGCTCATCAAGAGTCGTTTTCTCAAGGAGTTAATTATGCAGCTTCTCAATCACAAGCCCAGCATCTGATGATCCCTATGCCTATGCAAGGCACCGACTAA 672 45.54 MAFLFFFPRISPPSSIFASGFLPELAFMGSVHGFCFWVSFGACVSGVLAKMADGPASPGGGSHESGEQSPRSCVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKTYLTKYREGDTKGSAKGGDASSKKEAHPTPISQMAHQESFSQGVNYAASQSQAQHLMIPMPMQGTD 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2736226 2739509 + Hsped.05g02320.1 Hepe05g0232 569497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0232 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 80 144 IPR003958 -
Hepe05g0232 223 Gene3D Histone, subunit A 68 213 IPR009072 GO:0046982(InterPro)
Hepe05g0232 223 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Hepe05g0232 223 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Hepe05g0232 223 PRINTS CCAAT-binding transcription factor subunit A signature 146 164 - -
Hepe05g0232 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 63 204 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe05g0232 223 SUPERFAMILY Histone-fold 77 179 IPR009072 GO:0046982(InterPro)
Hepe05g0232 223 MobiDBLite consensus disorder prediction 183 199 - -
Hepe05g0232 223 MobiDBLite consensus disorder prediction 167 199 - -
Hepe05g0232 223 FunFam Nuclear transcription factor Y subunit B-3 69 194 - -
Hepe05g0232 223 ProSitePatterns NF-YB/HAP3 subunit signature. 111 127 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0232 Hepe-Chr5:2736226 Hepe06g0617 Hepe-Chr6:45893488 4.24e-50 dispersed
Hepe08g0381 Hepe-Chr8:3406020 Hepe05g0232 Hepe-Chr5:2736226 4.97e-53 transposed
Hepe01g0881 Hepe-Chr1:72932981 Hepe05g0232 Hepe-Chr5:2736226 1.22e-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55547 PF00808 CBFD_NFYB_HMF 1.30E-27 CL0012 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0232 K08065 - csv:101212699 324.709