Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0652 ATGGCGGTCGCTGCAAGAGCATTTCGATCAGTGGTGCGATCGAGCAGGCTCCCTCTTCTATCTCCATCTTCTTATGTGTTTGCTGCGCAGAAATCTCACTCTCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCTCAGAGTATCGCCGCTCGTCTTCAGAGTTCTGGATTGCTACGAAGCCAAGGCCTCATTGGCGGGAAGTGGATTGATGCTTATGATGGGAAGACCATGAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGAAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAAGCGCTTACGTAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTTATAACCTTAGAGCAAGGCAAACCCTTAACAGAAGCTGTGGGCGAGACTAACTATGGAGCCAGCTTCATCGAATACTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTAGTGAATGTTGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCCCAGGTAAGAAAAATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAATTGATGGCAGGAGCTGCTGGGACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGCAATGCACCTTGCATAATCTTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCGAAGTTTCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATATACGAGAAATTTTCAAAGGCTTTCTCAAAAGCAGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTTTGAACGTCTCCATGATATAA 1158 45.77 MAVAARAFRSVVRSSRLPLLSPSSYVFAAQKSHSHTLLIRQMSSEAQSIAARLQSSGLLRSQGLIGGKWIDAYDGKTMKVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSKRLRKWYELLIAHKEEIGQLITLEQGKPLTEAVGETNYGASFIEYFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFSKAFSKAVQNLQVGDGFGEGVAQGLNVSMI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5803528 5811369 + Hsped.08g06520.1 Hepe08g0652 576624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0652 385 SUPERFAMILY ALDH-like 43 380 IPR016161 GO:0016491(InterPro)
Hepe08g0652 385 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 380 IPR016163 GO:0016620(InterPro)
Hepe08g0652 385 Pfam Aldehyde dehydrogenase family 69 379 IPR015590 GO:0016491(InterPro)
Hepe08g0652 385 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 53 379 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Hepe08g0652 385 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491(InterPro)
Hepe08g0652 385 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491(InterPro)
Hepe08g0652 385 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 75 307 IPR016162 GO:0016491(InterPro)
Hepe08g0652 385 FunFam Succinate-semialdehyde dehydrogenase I 75 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0652 Hepe-Chr8:5803528 Hepe09g0747 Hepe-Chr9:7167395 8.06e-71 dispersed
Hepe08g0652 Hepe-Chr8:5803528 Hepe08g0653 Hepe-Chr8:5813364 9.24e-264 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0652 K17761 - csv:101217352 629.402