Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0307 ATGGCTCTGGTCCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCCCTCCCTCTCCCTCCCTCCTCCGCCCCCGCCCCTGCCGCCTCCTCCGCCATCTCCTCCTCCGACCTCGACAGGCTCCAAGTCCTCGGCCACGGCAACGGAGGCACCGTCTACAAAGTCCGCCACAAGCGCACCTCCACCACCTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTCCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACCGACTCTCCCTACGTCGTCCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATCTTGATGGAGTATATGGATCTAGGATCGCTCGATTCGCTCTTGAAGAAGAACTCGACGTTGTCCGAGGCCACGCTCGCTCACGTGTCGCGTCAGGTTCTTAACGGCCTTCACTACCTTCACACTCACAAGATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTGAGTAAGATCATGTGCAGGACTCTGGATGCTTGTAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGAGACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGTCAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGCTGCCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGCGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTGTGTAAGGAATCGAGATCCGATCGGTGA 951 56.99 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAPAPAASSAISSSDLDRLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHTHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCKESRSDR 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2348812 2349762 - Lag0024352.1 Lac10g0307 582838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0307 316 SUPERFAMILY Protein kinase-like (PK-like) 46 310 IPR011009 -
Lac10g0307 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0307 316 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 38 311 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac10g0307 316 SMART serkin_6 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0307 316 FunFam Mitogen-activated protein kinase 2 128 316 - -
Lac10g0307 316 Gene3D Phosphorylase Kinase; domain 1 33 127 - -
Lac10g0307 316 Gene3D Transferase(Phosphotransferase) domain 1 129 316 - -
Lac10g0307 316 FunFam Mitogen-activated protein kinase kinase 29 123 - -
Lac10g0307 316 Pfam Protein kinase domain 49 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0307 316 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
Lac10g0307 316 CDD PKc_MAPKK_plant_like 46 308 - -
Lac10g0307 316 ProSiteProfiles Protein kinase domain profile. 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0307 Lac-Chr10:2348812 Lac12g2499 Lac-Chr12:41993338 3.90E-83 dispersed
Lac10g0307 Lac-Chr10:2348812 Lac6g3082 Lac-Chr6:48366392 1.30E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85624 PF00069 Pkinase 6.10E-65 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0307 K20604 - csv:101203133 583.948