Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0307 | ATGGCTCTGGTCCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCCCTCCCTCTCCCTCCCTCCTCCGCCCCCGCCCCTGCCGCCTCCTCCGCCATCTCCTCCTCCGACCTCGACAGGCTCCAAGTCCTCGGCCACGGCAACGGAGGCACCGTCTACAAAGTCCGCCACAAGCGCACCTCCACCACCTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTCCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACCGACTCTCCCTACGTCGTCCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATCTTGATGGAGTATATGGATCTAGGATCGCTCGATTCGCTCTTGAAGAAGAACTCGACGTTGTCCGAGGCCACGCTCGCTCACGTGTCGCGTCAGGTTCTTAACGGCCTTCACTACCTTCACACTCACAAGATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTGAGTAAGATCATGTGCAGGACTCTGGATGCTTGTAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGAGACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGTCAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGCTGCCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGCGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTGTGTAAGGAATCGAGATCCGATCGGTGA | 951 | 56.99 | MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAPAPAASSAISSSDLDRLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHTHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCKESRSDR | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2348812 | 2349762 | - | Lag0024352.1 | Lac10g0307 | 582838 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0307 | 316 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 310 | IPR011009 | - | |
Lac10g0307 | 316 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 165 | 177 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0307 | 316 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 38 | 311 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Lac10g0307 | 316 | SMART | serkin_6 | 47 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g0307 | 316 | FunFam | Mitogen-activated protein kinase 2 | 128 | 316 | - | - | |
Lac10g0307 | 316 | Gene3D | Phosphorylase Kinase; domain 1 | 33 | 127 | - | - | |
Lac10g0307 | 316 | Gene3D | Transferase(Phosphotransferase) domain 1 | 129 | 316 | - | - | |
Lac10g0307 | 316 | FunFam | Mitogen-activated protein kinase kinase | 29 | 123 | - | - | |
Lac10g0307 | 316 | Pfam | Protein kinase domain | 49 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g0307 | 316 | ProSitePatterns | Protein kinases ATP-binding region signature. | 53 | 76 | IPR017441 | GO:0005524(InterPro) | |
Lac10g0307 | 316 | CDD | PKc_MAPKK_plant_like | 46 | 308 | - | - | |
Lac10g0307 | 316 | ProSiteProfiles | Protein kinase domain profile. | 47 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0307 | Lac-Chr10:2348812 | Lac12g2499 | Lac-Chr12:41993338 | 3.90E-83 | dispersed | |
Lac10g0307 | Lac-Chr10:2348812 | Lac6g3082 | Lac-Chr6:48366392 | 1.30E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85624 | PF00069 | Pkinase | 6.10E-65 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0307 | K20604 | - | csv:101203133 | 583.948 |