Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g3099 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGTAGCAGCAGCACTGGAGTTAGTTCTCAGCTTCCACCACCTCCACCTCCTCCACCGCCTCCTCCGCCGCCACCCCATGGCGTCGGTGGCAGCGGTTCGATCCGGCCCGGCTCGATGGCCGAGCGAGCTCGATTGGCGAATATTCCTATGCCTGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAACACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACAAGAGGTGGGGCCCTGAGGAACGTCCCGGTCGGGGGCGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGCTCGAAATCGCCGCCGGTCAGCTCGGACCGGCAACAAACCAGCGGTTCAGGCAATTCCTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCGCTCCGGTTCATGGCTCCTCTCCACCAACAGCTCAGTGACTTCGACATGGGACCCTTCAACTACGGCGGCGGCCTCTCATCTCCGGCCACCGCCGCCGGCGACCTGAGTTTCCAATTGGGCAACACCAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAGCAACAATCTCCCCAATTTCCCTTCCTGTCCGGCCTTGACCCTTTCGACGGCGGTAGCAGCGGTGGCGGCGGAGACGCGTCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATTTAAGCCAGCAAATTGGGAATAATTCAGTGAAAATGGAAGAAACCCCAGATCATCAAGTTAATGTTGGAAGACAATTTCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1011 53.31 MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLPPPPPPPPPPPPPPHGVGGSGSIRPGSMAERARLANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLRFMAPLHQQLSDFDMGPFNYGGGLSSPATAAGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQSPQFPFLSGLDPFDGGSSGGGGDASGWQMRPKLPSSSRNLSQQIGNNSVKMEETPDHQVNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45399575 45401088 - Lag0027144.1 Lac10g3099 585630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g3099 336 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 MobiDBLite consensus disorder prediction 252 283 - -
Lac10g3099 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 162 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 MobiDBLite consensus disorder prediction 33 53 - -
Lac10g3099 336 MobiDBLite consensus disorder prediction 1 32 - -
Lac10g3099 336 MobiDBLite consensus disorder prediction 1 61 - -
Lac10g3099 336 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 MobiDBLite consensus disorder prediction 137 172 - -
Lac10g3099 336 MobiDBLite consensus disorder prediction 120 176 - -
Lac10g3099 336 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g3099 336 SUPERFAMILY Formin homology 2 domain (FH2 domain) 39 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3099 Lac-Chr10:45399575 Lac7g2704 Lac-Chr7:46109159 3.80E-44 dispersed
Lac10g3099 Lac-Chr10:45399575 Lac8g2507 Lac-Chr8:42922708 2.70E-50 wgd
Lac10g3099 Lac-Chr10:45399575 Lac9g2483 Lac-Chr9:43664546 1.90E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22857 PF02701 zf-Dof 3.30E-32 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g3099 - - - 0.0