Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g3099 | ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGTAGCAGCAGCACTGGAGTTAGTTCTCAGCTTCCACCACCTCCACCTCCTCCACCGCCTCCTCCGCCGCCACCCCATGGCGTCGGTGGCAGCGGTTCGATCCGGCCCGGCTCGATGGCCGAGCGAGCTCGATTGGCGAATATTCCTATGCCTGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAACACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACAAGAGGTGGGGCCCTGAGGAACGTCCCGGTCGGGGGCGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGCTCGAAATCGCCGCCGGTCAGCTCGGACCGGCAACAAACCAGCGGTTCAGGCAATTCCTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCGCTCCGGTTCATGGCTCCTCTCCACCAACAGCTCAGTGACTTCGACATGGGACCCTTCAACTACGGCGGCGGCCTCTCATCTCCGGCCACCGCCGCCGGCGACCTGAGTTTCCAATTGGGCAACACCAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAGCAACAATCTCCCCAATTTCCCTTCCTGTCCGGCCTTGACCCTTTCGACGGCGGTAGCAGCGGTGGCGGCGGAGACGCGTCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATTTAAGCCAGCAAATTGGGAATAATTCAGTGAAAATGGAAGAAACCCCAGATCATCAAGTTAATGTTGGAAGACAATTTCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG | 1011 | 53.31 | MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLPPPPPPPPPPPPPPHGVGGSGSIRPGSMAERARLANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLRFMAPLHQQLSDFDMGPFNYGGGLSSPATAAGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQSPQFPFLSGLDPFDGGSSGGGGDASGWQMRPKLPSSSRNLSQQIGNNSVKMEETPDHQVNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 45399575 | 45401088 | - | Lag0027144.1 | Lac10g3099 | 585630 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g3099 | 336 | ProSiteProfiles | Zinc finger Dof-type profile. | 79 | 133 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac10g3099 | 336 | MobiDBLite | consensus disorder prediction | 252 | 283 | - | - | |
Lac10g3099 | 336 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 67 | 162 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac10g3099 | 336 | MobiDBLite | consensus disorder prediction | 33 | 53 | - | - | |
Lac10g3099 | 336 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lac10g3099 | 336 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Lac10g3099 | 336 | ProSitePatterns | Zinc finger Dof-type signature. | 81 | 117 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac10g3099 | 336 | MobiDBLite | consensus disorder prediction | 137 | 172 | - | - | |
Lac10g3099 | 336 | MobiDBLite | consensus disorder prediction | 120 | 176 | - | - | |
Lac10g3099 | 336 | Pfam | Dof domain, zinc finger | 78 | 133 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac10g3099 | 336 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 39 | 47 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3099 | Lac-Chr10:45399575 | Lac7g2704 | Lac-Chr7:46109159 | 3.80E-44 | dispersed | |
Lac10g3099 | Lac-Chr10:45399575 | Lac8g2507 | Lac-Chr8:42922708 | 2.70E-50 | wgd | |
Lac10g3099 | Lac-Chr10:45399575 | Lac9g2483 | Lac-Chr9:43664546 | 1.90E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22857 | PF02701 | zf-Dof | 3.30E-32 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g3099 | - | - | - | 0.0 |