Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2072 | ATGGAATGTCTCGATGCGGCTCTCAAAACCTGTTTCCGCAACGATATTTCCCTTCAATTGACCCCTCAACTCTCTTTTCACGATCATACCGCCTCTTTTCATCCCCAGAATGTCGTCTCCTCTGATGATTTCTTCGTTGATCAACTCCTTGATTTCTCTAATGACGATCAGTTTGTACAACAGGACGAGATTGCTCACGAGGATGATGACGATAAGGCCTCTGTTTCGCTTTCCATTTCCCTCTCCGCTCAAGAACAACGCCAGAACTCCCTACTTTCCGACCTTCCTTCCTTGCCCTCCGGCGCGGCGGATGATTTGGCCAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCCTTCTCTGGATTCTCCGCTCCCTTCCCCTCCGCCGGAATTTCTTCGTCCATGAAATCGTCCCCCGCGGAGGAGCAACCGGACAACGACGGTTCCGTTTCGCCACCGGAGCCCTGTTTCAAGACGCCCGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTCGCTTCACCGTCGTTGACCGAGTCTTCCTCCAGTTCCACCACGTCCTCCTCTTCCTCGTCGCCGGCGGGTCCTTGGCTTATAATTTCCGACCGATTCGAACCGGAAATTCCGGTAACCAAGAAACCCAAGAGAAAGTCGCCGCTGGAAAACGCCAGAACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTACGGTTCAAATCGGGTCGACTTTTACCCGAATACCGACCCGCCTGCAGCCCGACTTTCTCCAGCGAATTGCACTCCAACCATCACCGGAAAGTCCTCGAGATGCGCCGGAAAAAGGAAACCACCGCCCCCGCCGAGTTTTTGACCTCAGAAAAAGAATAA | 969 | 55.21 | MECLDAALKTCFRNDISLQLTPQLSFHDHTASFHPQNVVSSDDFFVDQLLDFSNDDQFVQQDEIAHEDDDDKASVSLSISLSAQEQRQNSLLSDLPSLPSGAADDLANLEWLSHFVEDSFSGFSAPFPSAGISSSMKSSPAEEQPDNDGSVSPPEPCFKTPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPAGPWLIISDRFEPEIPVTKKPKRKSPLENARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTAPAEFLTSEKE | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39260596 | 39261665 | - | Lag0019156.1 | Lac5g2072 | 608714 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2072 | 322 | MobiDBLite | consensus disorder prediction | 131 | 169 | - | - | |
Lac5g2072 | 322 | ProSiteProfiles | GATA-type zinc finger domain profile. | 237 | 273 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2072 | 322 | PANTHER | GATA TRANSCRIPTION FACTOR | 43 | 309 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Lac5g2072 | 322 | FunFam | GATA transcription factor | 233 | 318 | - | - | |
Lac5g2072 | 322 | MobiDBLite | consensus disorder prediction | 185 | 204 | - | - | |
Lac5g2072 | 322 | MobiDBLite | consensus disorder prediction | 131 | 146 | - | - | |
Lac5g2072 | 322 | SMART | GATA_3 | 237 | 291 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2072 | 322 | MobiDBLite | consensus disorder prediction | 219 | 244 | - | - | |
Lac5g2072 | 322 | ProSitePatterns | GATA-type zinc finger domain. | 243 | 268 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2072 | 322 | PIRSF | Txn_fac_GATA_plant | 13 | 321 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Lac5g2072 | 322 | Gene3D | - | 235 | 312 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lac5g2072 | 322 | Pfam | GATA zinc finger | 243 | 277 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2072 | 322 | MobiDBLite | consensus disorder prediction | 185 | 205 | - | - | |
Lac5g2072 | 322 | CDD | ZnF_GATA | 242 | 290 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2072 | 322 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 236 | 299 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2072 | Lac-Chr5:39260596 | Lac6g1069 | Lac-Chr6:9819987 | 5.20E-35 | dispersed | |
Lac10g0736 | Lac-Chr10:5719956 | Lac5g2072 | Lac-Chr5:39260596 | 1.20E-19 | transposed | |
Lac6g2669 | Lac-Chr6:44435948 | Lac5g2072 | Lac-Chr5:39260596 | 1.30E-14 | transposed | |
Lac9g1746 | Lac-Chr9:37110476 | Lac5g2072 | Lac-Chr5:39260596 | 4.50E-42 | transposed | |
Lac1g2916 | Lac-Chr1:50009642 | Lac5g2072 | Lac-Chr5:39260596 | 3.10E-07 | wgd | |
Lac1g2978 | Lac-Chr1:50508340 | Lac5g2072 | Lac-Chr5:39260596 | 6.10E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23871 | PF00320 | GATA | 4.10E-16 | CL0167 | Lac | TF |
Pathway information
