Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2072 ATGGAATGTCTCGATGCGGCTCTCAAAACCTGTTTCCGCAACGATATTTCCCTTCAATTGACCCCTCAACTCTCTTTTCACGATCATACCGCCTCTTTTCATCCCCAGAATGTCGTCTCCTCTGATGATTTCTTCGTTGATCAACTCCTTGATTTCTCTAATGACGATCAGTTTGTACAACAGGACGAGATTGCTCACGAGGATGATGACGATAAGGCCTCTGTTTCGCTTTCCATTTCCCTCTCCGCTCAAGAACAACGCCAGAACTCCCTACTTTCCGACCTTCCTTCCTTGCCCTCCGGCGCGGCGGATGATTTGGCCAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCCTTCTCTGGATTCTCCGCTCCCTTCCCCTCCGCCGGAATTTCTTCGTCCATGAAATCGTCCCCCGCGGAGGAGCAACCGGACAACGACGGTTCCGTTTCGCCACCGGAGCCCTGTTTCAAGACGCCCGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTCGCTTCACCGTCGTTGACCGAGTCTTCCTCCAGTTCCACCACGTCCTCCTCTTCCTCGTCGCCGGCGGGTCCTTGGCTTATAATTTCCGACCGATTCGAACCGGAAATTCCGGTAACCAAGAAACCCAAGAGAAAGTCGCCGCTGGAAAACGCCAGAACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTACGGTTCAAATCGGGTCGACTTTTACCCGAATACCGACCCGCCTGCAGCCCGACTTTCTCCAGCGAATTGCACTCCAACCATCACCGGAAAGTCCTCGAGATGCGCCGGAAAAAGGAAACCACCGCCCCCGCCGAGTTTTTGACCTCAGAAAAAGAATAA 969 55.21 MECLDAALKTCFRNDISLQLTPQLSFHDHTASFHPQNVVSSDDFFVDQLLDFSNDDQFVQQDEIAHEDDDDKASVSLSISLSAQEQRQNSLLSDLPSLPSGAADDLANLEWLSHFVEDSFSGFSAPFPSAGISSSMKSSPAEEQPDNDGSVSPPEPCFKTPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPAGPWLIISDRFEPEIPVTKKPKRKSPLENARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTAPAEFLTSEKE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39260596 39261665 - Lag0019156.1 Lac5g2072 608714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2072 322 MobiDBLite consensus disorder prediction 131 169 - -
Lac5g2072 322 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 PANTHER GATA TRANSCRIPTION FACTOR 43 309 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lac5g2072 322 FunFam GATA transcription factor 233 318 - -
Lac5g2072 322 MobiDBLite consensus disorder prediction 185 204 - -
Lac5g2072 322 MobiDBLite consensus disorder prediction 131 146 - -
Lac5g2072 322 SMART GATA_3 237 291 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 MobiDBLite consensus disorder prediction 219 244 - -
Lac5g2072 322 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 PIRSF Txn_fac_GATA_plant 13 321 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lac5g2072 322 Gene3D - 235 312 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac5g2072 322 Pfam GATA zinc finger 243 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 MobiDBLite consensus disorder prediction 185 205 - -
Lac5g2072 322 CDD ZnF_GATA 242 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2072 Lac-Chr5:39260596 Lac6g1069 Lac-Chr6:9819987 5.20E-35 dispersed
Lac10g0736 Lac-Chr10:5719956 Lac5g2072 Lac-Chr5:39260596 1.20E-19 transposed
Lac6g2669 Lac-Chr6:44435948 Lac5g2072 Lac-Chr5:39260596 1.30E-14 transposed
Lac9g1746 Lac-Chr9:37110476 Lac5g2072 Lac-Chr5:39260596 4.50E-42 transposed
Lac1g2916 Lac-Chr1:50009642 Lac5g2072 Lac-Chr5:39260596 3.10E-07 wgd
Lac1g2978 Lac-Chr1:50508340 Lac5g2072 Lac-Chr5:39260596 6.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23871 PF00320 GATA 4.10E-16 CL0167 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2072 - - - 0.0