Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2421 ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCGGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAAATGCGACATCTGTCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATTCTTATGTAACTGGTCATCAGCGCTTTCTGCTCACTGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTGCTTGTTCTTCTATGGCTAAGTCACATTCGAGAGAGAAACCTACCGAGACAAAAGTTAAACCGTTGTCTGAAAGGGAATTATCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCCTGTCTATACAAGGTGGATCTGAGGACTTCATGACAGATAGAACATTGCTTACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGAGTTTATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAATTTTGAGAGCTGGTGACGTTGAACTGGACGACGACGATGAGTGCTCAGGTCACGTTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAACGGTACATTCTCGAAACGAAGGAGGCAGTTCTAG 891 46.91 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANSYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKPTETKVKPLSERELSMPSPGELSRSLSIQGGSEDFMTDRTLLTGDSVSGGFSQWQMDELINLTGFNQNYEFMDNGSSKADSGKLGDSDSSPILRAGDVELDDDDECSGHVPEASWTVPQVPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42833531 42835743 - Lag0019505.1 Lac5g2421 609063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2421 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Lac5g2421 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 278 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac5g2421 296 Gene3D Classic Zinc Finger 1 92 - -
Lac5g2421 296 FunFam B-box zinc finger protein 22 1 93 - -
Lac5g2421 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lac5g2421 296 MobiDBLite consensus disorder prediction 115 150 - -
Lac5g2421 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 MobiDBLite consensus disorder prediction 121 135 - -
Lac5g2421 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1427 Lac-Chr4:32701744 Lac5g2421 Lac-Chr5:42833531 7.80E-30 dispersed
Lac4g1778 Lac-Chr4:36729827 Lac5g2421 Lac-Chr5:42833531 1.10E-34 dispersed
Lac5g2421 Lac-Chr5:42833531 Lac6g0470 Lac-Chr6:3872291 6.10E-30 dispersed
Lac5g2421 Lac-Chr5:42833531 Lac9g1735 Lac-Chr9:36988123 3.60E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23898 PF00643 zf-B_box 3.40E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2421 - - - 0.0