Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2636 | ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAAGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTCTGTGGCGCCGAGATCGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTGTTCTCTTTTGGCCACCCTTGCGTCGAGGCTCTTATCGAGCGCTTTGTGACTCGAAACCCTCCACCGAGCTCTGGTACACTCCAATTGATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTGAATGCACAACTAACTCAAGTGTTGAATCAGTTAGAGATGGAGCGAAAGCGTGGTGAGGAGTTAAACAAACTGCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAATTGGAAATGCATCAACTTGAACAACTTAAAGCATCTTTAGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATAGGATTTTGATTCAAACCTCCAATGGCAATCCGCCGCCGCAGTTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGCGGCGTTTTCGTCGTCGATTCAAAGAACATGATTTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA | 660 | 49.24 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF | 219 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 44858517 | 44859323 | + | Lag0019720.1 | Lac5g2636 | 609278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2636 | 219 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2636 | 219 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2636 | 219 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2636 | 219 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2636 | 219 | Gene3D | - | 83 | 175 | - | - | |
| Lac5g2636 | 219 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2636 | 219 | Coils | Coil | 138 | 165 | - | - | |
| Lac5g2636 | 219 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2636 | 219 | Coils | Coil | 93 | 120 | - | - | |
| Lac5g2636 | 219 | FunFam | Agamous-like MADS-box protein AGL62 | 17 | 83 | - | - | |
| Lac5g2636 | 219 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2636 | 219 | PANTHER | MADS BOX PROTEIN | 6 | 157 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lac5g2636 | 219 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lac5g2636 | 219 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g1062 | Lac-Chr10:8586093 | Lac5g2636 | Lac-Chr5:44858517 | 9.10E-26 | dispersed | |
| Lac5g2636 | Lac-Chr5:44858517 | Lac9g1189 | Lac-Chr9:27714336 | 1.00E-26 | dispersed | |
| Lac5g2636 | Lac-Chr5:44858517 | Lac1g3500 | Lac-Chr1:54281170 | 7.60E-38 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23911 | PF00319 | SRF-TF | 3.50E-24 | No_clan | Lac | TF |
Pathway information