Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2035 ATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGAAGATAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCCTTCTCCCTAGGGAAGGTGCACAATCATGAAAAACAAGATAGTCATGTCCCTGTTAGTTTGACGACAACCGTCTCTGAATCACAACCAGTTAAAGTGGAAACGGAGGTAGAAGTTGCTGATGTTGCAAAAGTAACAAGGTCCCTCCGACGTAAACCATGTATAAACTATAGACAATACGATTACTGCTCTGACGATGAGCTTGGTACAAAGCGTCTTGATCAGAATTTTTCTTCCAGGCCTCCTCTTTCAAAGGGAGTCATCCGTGGATGTCCCCAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCTTCCAGAAGAATCCTGCCGGACGGAGCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATTCGAGCAAAAGCAGAACCATATGGGATTTGTCGTATAGTCCCGCCATCTTCTTGGAAACCTCCATGCCCTCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGTGACTCGTGTCCAAAGAATTGATAAGCTTCAGAATCGAGATTCAATAAGAAAGAACTTTAGGGTTTGCAATCAAATGAGAAGGAAAAGGAGGAGGGTTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGGAGATGCTGGGTCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACTTTAGCATCATTTCAAAAATATGCCGATGACTTTAAGTTTCAGTATTTTAGCAAACCACTCAATGATACTGCAAAGGGATGTGACCCATCCTTGCTGCCAGAAAACGAACATTGGAAACCATCTTTGGAAAATATTGAAGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAAGGTTGCTGTCAAGAGGGCTCTACATCAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTTCTTAGCTACGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGACCTTTTTGAAGAACAACCCGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAGCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGCCAAATTGCTGTAGAATTATATCGTGAGCAGGGACGAAGAACCACTATTTCCCATGATAAACTATTGCTTGGTGCCGCTAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGATGGAGTGTGCATGGAGGAACTTTCCTGGCAGTTCTTCTCAGGCAATGAAGATGGAGAGCAACTTTGATGCTTCTAATGAGAGAGAATGCAGTTCATGTCTCTTTGACTTGCATCTATCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCAAAGCAATTGTGTTCTTGTGCTTGGGAAGAGAGATTCTTTCTCTTTCGCTATGACATCAGTGAACTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCATTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTACTGCCAACTCGAACTACTATTGGCAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACAGCTTCTTTTCTAGAAGATAAGAAGGTAATTCCCACACCTAACGAATCTCAGAAGGAAGTTGAGCAGCAAAATCATAAATCTCAGGTGAAAAGAGAAAACCATGACCTTGTGGCAACCAATTTGAGGCATGTAGGTTCGGAGTTCTCTAAGGAGGATACTAATGCTCTGAATTTGGTAGAAGAGAAAAATAGAATGGATAAAATGTGTCCTGAAAATGTCATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTCTAGCTGAAAGTGCATTAGTAAAGCAGCTGGAAACTTCAGATCGAATCACTGATGTTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATACAATCTTGCACACCCCGGTGACTGATGCCACGACCATGGCAGAAAAGGAGGTCAACTTGTTGATTGAAAAAAAATTGAACAATTGCCAATTGAGCATCGTACCTTTAAATAATAAACAGTCTCAAAACATTAACTTATCAGTTAGAAATGCAGCCAATGCTATTCAGAACAACAATTTGTCAGAAGCAGGAGTAGGTCATAGTAATAAAGTATTTCCAGCTTCAACAGACACTAATTCTCAGAAACCACAGACATGTGGCTCTGGAAAACCGAATGAGGGCAAGCATGGAAATTTGGGAACAAGTGCTACCTCTTGTTTGTTAGACACTAATAGAACTACTGAAAATTTATCCTGCAATCAAGCTAATGTGGACCGATTCTTGAGGCAAAAGGGTCCTCGAATGGCAAAGGTTGTTCGGAGGATTAACTGCAATGTAGAGCCTTTAGAATATGGAATTGTGCTCCCAGGAAAGTCTTGGTCGAACAGTCAGGCCATTTTTCCAAAGGGATTTAAGAGCAGGGTCAAGTATATAAATGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAGATTCTCGATGCTGGACGGGAAGAACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCGAGTGAGGTATTCGTTCATGTTTCTGCTGCCAGATGTTGGGAGTTGATTAGAGACCGAGTCAATCAGGAAATCGCAAAGCAACATAAGTTGGGTAGAACAAATCTTCCTCCTCTACAGCCTCCTGGGAGTTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCCGCAATTGTGCAGGCCGTTGAGGCATTGGATCGAAATCGAGTGTGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCATGTACAGAGTCCACAACCGTCTCAGTCAACAGAAATTAGTCGAAACATGCAAACAACCGAGAGGAACCACAGGGTTGATTCTAGGCCAGCTGGAGTTGATATAATACTTGGGGGATTGTTGAAGAAAGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCGAGACGTGCTGACACGACTTGTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3711 41.88 MGTELIRVCVEEDNDDFPSVPPGFESYISFSLGKVHNHEKQDSHVPVSLTTTVSESQPVKVETEVEVADVAKVTRSLRRKPCINYRQYDYCSDDELGTKRLDQNFSSRPPLSKGVIRGCPQCNNCQKVVARWLPEESCRTELEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFVTRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVNRKGVDVTTLNGKNGDAGSYEAERFGFDPGPDFTLASFQKYADDFKFQYFSKPLNDTAKGCDPSLLPENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKGCCQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKAEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGVLARAFKTRVEMECAWRNFPGSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERFFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSIGNPQWKEFLRQSSLLPTRTTIGSPSHHAKKLSEVTASFLEDKKVIPTPNESQKEVEQQNHKSQVKRENHDLVATNLRHVGSEFSKEDTNALNLVEEKNRMDKMCPENVILLSDDEGDEHKKTISNGLAESALVKQLETSDRITDVDSKASLCNYNENTILHTPVTDATTMAEKEVNLLIEKKLNNCQLSIVPLNNKQSQNINLSVRNAANAIQNNNLSEAGVGHSNKVFPASTDTNSQKPQTCGSGKPNEGKHGNLGTSATSCLLDTNRTTENLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVLPGKSWSNSQAIFPKGFKSRVKYINVLDPSTLCYYVSEILDAGREEPLFMVVLEHCPSEVFVHVSAARCWELIRDRVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAVEALDRNRVCGEYWDSRPYSRPHVQSPQPSQSTEISRNMQTTERNHRVDSRPAGVDIILGGLLKKANLEELNSLYTLLNDNRPTVDRDVLTRLVNEEIQSHRR 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35537685 35546881 + Lag0006004.1 Lac6g2035 611804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2035 1236 SMART fyrn_3 1014 1058 IPR003888 GO:0005634(InterPro)
Lac6g2035 1236 ProSiteProfiles FYR domain FYRN motif profile. 1000 1058 IPR003888 GO:0005634(InterPro)
Lac6g2035 1236 SMART cupin_9 359 525 IPR003347 -
Lac6g2035 1236 MobiDBLite consensus disorder prediction 937 961 - -
Lac6g2035 1236 SUPERFAMILY Clavaminate synthase-like 329 552 - -
Lac6g2035 1236 SMART JmjN_1 144 185 IPR003349 -
Lac6g2035 1236 SMART fyrc_3 1064 1158 IPR003889 GO:0005634(InterPro)
Lac6g2035 1236 MobiDBLite consensus disorder prediction 1152 1180 - -
Lac6g2035 1236 Pfam jmjN domain 146 179 IPR003349 -
Lac6g2035 1236 Pfam F/Y rich C-terminus 1062 1146 IPR003889 GO:0005634(InterPro)
Lac6g2035 1236 ProSiteProfiles FYR domain FYRC motif profile. 1060 1150 IPR003889 GO:0005634(InterPro)
Lac6g2035 1236 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Lac6g2035 1236 Pfam C5HC2 zinc finger 615 666 IPR004198 -
Lac6g2035 1236 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
Lac6g2035 1236 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
Lac6g2035 1236 MobiDBLite consensus disorder prediction 1154 1172 - -
Lac6g2035 1236 Gene3D Cupin 130 509 - -
Lac6g2035 1236 PANTHER LYSINE-SPECIFIC DEMETHYLASE 126 938 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Lac6g2035 1236 MobiDBLite consensus disorder prediction 751 771 - -
Lac6g2035 1236 FunFam Putative lysine-specific demethylase JMJ16 1006 1144 - -
Lac6g2035 1236 Pfam F/Y-rich N-terminus 1014 1057 IPR003888 GO:0005634(InterPro)
Lac6g2035 1236 Gene3D - 1007 1144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1268 Lac-Chr10:11181265 Lac6g2035 Lac-Chr6:35537685 4.40E-232 dispersed
Lac11g2097 Lac-Chr11:36864793 Lac6g2035 Lac-Chr6:35537685 1.10E-92 dispersed
Lac4g1871 Lac-Chr4:37963892 Lac6g2035 Lac-Chr6:35537685 1.30E-178 dispersed
Lac6g2035 Lac-Chr6:35537685 Lac9g1477 Lac-Chr9:33117063 2.00E-50 dispersed
Lac6g2035 Lac-Chr6:35537685 Lac5g0192 Lac-Chr5:1650264 7.80E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24051 PF02373 JmjC 1.40E-44 CL0029 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2035 K11446 - csv:101208186 2184.45