Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0287 ATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCATTGAGATCAAAGGCTTTGGTGATACACAGATGATGCTGAAGGAGAAAACAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCAATTCAACAGCTTCTGCTTTCAAACGATCTAGATATTTTATTTAACAGAGGTCGAGTACCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCGAATTTGCAAACACCTGATGCAAGCAGTGGGAATTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTTAACATCACAAGGTTGGAAACTTCTTAGCGATCAAAATGGAGATGTAAAATCACATATGCAGAGAAACATTCTCACTCCCCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATTTATGTGGGGTCATGTATACAGACTGAAGCAGAAGTAGAGGCTTTGTCAAATAACGTGGGGATTACTGCTGTATTGAATTTTCAAAGTTCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCATGCCAAAAATATGATATTCTCATGATCAACTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTTCCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAGAAGAACCACCGAGTTTTTGTAACTTGTACCACTGGTTTTGATCGACCCCCAGCAAGTGTGATTGCATATTTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTGGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCCAGTCACAAAGGTGGCCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTACAAGTACATCACAAATGGTCAATGGAGGCACTCAACAACTTCACCTGCTGAAAGAGACGATAGGGGAAATCTCAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCGGTTCAACCGCAAAAAAAGGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGATTAACTCCCAAGTAG 1434 42.05 MVGDTLKKASDSSGVKLIEIKGFGDTQMMLKEKTGSFSLVLERPFTPFPIQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTPDASSGNSGFATFSSKFLTSQGWKLLSDQNGDVKSHMQRNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEAEVEALSNNVGITAVLNFQSSTEAENWGINSKLINESCQKYDILMINYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRPPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTTSPAERDDRGNLNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 477
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 3356020 3361318 + Lag0027674.1 Lac8g0287 616121
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0287 477 Gene3D Protein tyrosine phosphatase superfamily 170 436 IPR029021 -
Lac8g0287 477 CDD E_set_AMPKbeta_like_N 344 423 - -
Lac8g0287 477 Gene3D Immunoglobulins 331 427 IPR013783 -
Lac8g0287 477 Pfam Glycogen recognition site of AMP-activated protein kinase 344 425 IPR032640 -
Lac8g0287 477 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 331 427 - -
Lac8g0287 477 CDD DSP_laforin-like 176 322 IPR045204 GO:0019203(InterPro)
Lac8g0287 477 SUPERFAMILY E set domains 341 424 IPR014756 -
Lac8g0287 477 Pfam Dual specificity phosphatase, catalytic domain 186 309 IPR000340 GO:0016311(InterPro)
Lac8g0287 477 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 1 471 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Lac8g0287 477 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 169 315 IPR029021 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0287 - - - 0.0