Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g0287 | ATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCATTGAGATCAAAGGCTTTGGTGATACACAGATGATGCTGAAGGAGAAAACAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCAATTCAACAGCTTCTGCTTTCAAACGATCTAGATATTTTATTTAACAGAGGTCGAGTACCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCGAATTTGCAAACACCTGATGCAAGCAGTGGGAATTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTTAACATCACAAGGTTGGAAACTTCTTAGCGATCAAAATGGAGATGTAAAATCACATATGCAGAGAAACATTCTCACTCCCCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATTTATGTGGGGTCATGTATACAGACTGAAGCAGAAGTAGAGGCTTTGTCAAATAACGTGGGGATTACTGCTGTATTGAATTTTCAAAGTTCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCATGCCAAAAATATGATATTCTCATGATCAACTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTTCCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAGAAGAACCACCGAGTTTTTGTAACTTGTACCACTGGTTTTGATCGACCCCCAGCAAGTGTGATTGCATATTTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTGGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCCAGTCACAAAGGTGGCCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTACAAGTACATCACAAATGGTCAATGGAGGCACTCAACAACTTCACCTGCTGAAAGAGACGATAGGGGAAATCTCAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCGGTTCAACCGCAAAAAAAGGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGATTAACTCCCAAGTAG | 1434 | 42.05 | MVGDTLKKASDSSGVKLIEIKGFGDTQMMLKEKTGSFSLVLERPFTPFPIQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTPDASSGNSGFATFSSKFLTSQGWKLLSDQNGDVKSHMQRNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEAEVEALSNNVGITAVLNFQSSTEAENWGINSKLINESCQKYDILMINYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRPPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTTSPAERDDRGNLNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK | 477 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3356020 | 3361318 | + | Lag0027674.1 | Lac8g0287 | 616121 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g0287 | 477 | Gene3D | Protein tyrosine phosphatase superfamily | 170 | 436 | IPR029021 | - | |
| Lac8g0287 | 477 | CDD | E_set_AMPKbeta_like_N | 344 | 423 | - | - | |
| Lac8g0287 | 477 | Gene3D | Immunoglobulins | 331 | 427 | IPR013783 | - | |
| Lac8g0287 | 477 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 344 | 425 | IPR032640 | - | |
| Lac8g0287 | 477 | FunFam | Phosphoglucan phosphatase LSF1, chloroplastic | 331 | 427 | - | - | |
| Lac8g0287 | 477 | CDD | DSP_laforin-like | 176 | 322 | IPR045204 | GO:0019203(InterPro) | |
| Lac8g0287 | 477 | SUPERFAMILY | E set domains | 341 | 424 | IPR014756 | - | |
| Lac8g0287 | 477 | Pfam | Dual specificity phosphatase, catalytic domain | 186 | 309 | IPR000340 | GO:0016311(InterPro) | |
| Lac8g0287 | 477 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 1 | 471 | - | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER) | |
| Lac8g0287 | 477 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 169 | 315 | IPR029021 | - |
Pathway information