Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0950 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTGCGGATTTTGGATAGTGAAGGAGCAGTTGATGCTGGTAAAGATGTCACTAAATGTTCTGTTGCTTCTTTTGCTGATATTGATCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGCAATCTGTGGTTGGGAGCTCTCCTTCACACGAGATTGCTAGAATGAGTCCCCTTAAACCTCCAAAAATTCCAGTCGAATCGGCAGTTCGGCGCCCATCGTTTACTCGTTCGTCGTTTTCGAAGCCCAAATCAAGGCTAGTAGAGCCACCTTGTCCTGATGGTGTAAGTTTGGAAGAAGAAAAAACTCAAGCAAAATCAACATCTGGTTCACCATTCTATAGCTCTTCGAAGACGGATTCCCCAGCTAAGATAACTACTGCGACTAGTCCTCGAGATGCTCTTAAGTCGGCCCCAATAACTCCAAAGACACCATTGATTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGAAAAGGACCATTTTAATTGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGATTGCTAGCTTAACACTAGACAAGTTGGTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAGTGGTGTGTTCTGGTATTAGTTATTTTCTGTGGTCGATTATTTTCGCAATGGTTTATCAACTGCCTGGTTTTTTTGATTGAAAGAAACTTTCTACTCAAAAGAAAGGTTCTATATTTTGTCTTTGGGCTGAGGAAGAGTGTTATCATTTTTATATGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCAGCAAGCGGTCTAAGAAAGGCAATGAAATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATTGGAGCAGGATTATGGCTGGTGAAAACTTTGTTGGTAAAAATACTGGCTGCTTCTTTTCAATGTGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAGTATATACTGCGCACTCTATCAGGACCTCCGCTGATGGAGATGGCTGAAAGAATTGGGAGAGCAGCAAGCACAGGGCAGTTGAGTTTTAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAGCTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGTCTAATCAATGTTATAAGGAGCTCTGGGCTGTCCACTATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGAGTGAGCAAAAGGACAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGGAACGTGGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTATCGTTTTATGAGCAAGGAGGAAGTTGATAATGTGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAGTGTTTATGTCGAACGCAAGTCGCTAGCCCACTCATTGAATGACACCAAAACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGCAATTGTATTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTGACGACTCAAGTACTCGTCTTCATTTCATCACAGCTTCTGCTGGTGGTTTTCATGTTTGGCAACACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTTGTGATGCATCCATTCGACGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGCGATTCGATCGAATTCTCTGTCGACTTTTCCACGTCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACTTAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTGTGCTCGTGAAGGAGATCGAAAATGTCAACAAGATGAAACTGGGTCTGTGCGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGCCGCAGATCGGACCTCGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTCGGCATCAAGTATCATCTGCTACCTCAAGAAGTGCAGCTCAACTATGTGAGTTCAGCAGCTCCCATGGTTCCACCCTCGCGGAGATAA 2310 42.25 MADKKGTEQVVLRILDSEGAVDAGKDVTKCSVASFADIDLKETRSFRCTIPQSVVGSSPSHEIARMSPLKPPKIPVESAVRRPSFTRSSFSKPKSRLVEPPCPDGVSLEEEKTQAKSTSGSPFYSSSKTDSPAKITTATSPRDALKSAPITPKTPLIGSTGSEEEDDEEVYKTAELKVKERSGKKLKRTILIEWVAFLCLTGCLIASLTLDKLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVFGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCARFFDRIQESIFHQYILRTLSGPPLMEMAERIGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEESEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLYRFMSKEEVDNVLPLFEGAVETGKIKRKTLKNWLVSVYVERKSLAHSLNDTKTAIEELNKLASAIVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVLVKEIENVNKMKLGLCVNHTINFQNYGDKSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYVSSAAPMVPPSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8833271 8837384 + Maker00022453 Lcy2g0950 625715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0950 769 MobiDBLite consensus disorder prediction 52 166 - -
Lcy2g0950 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Lcy2g0950 769 Gene3D - 598 647 IPR023408 -
Lcy2g0950 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
Lcy2g0950 769 MobiDBLite consensus disorder prediction 112 144 - -
Lcy2g0950 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g0950 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 68 759 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Lcy2g0950 769 PIRSF Memb_At2g17000 35 768 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0950 Lcy-Chr2:8833271 Lcy9g1946 Lcy-Chr9:44456524 1.09E-215 dispersed
Lcy13g0518 Lcy-Chr13:6427292 Lcy2g0950 Lcy-Chr2:8833271 1.81E-212 transposed
Lcy2g0950 Lcy-Chr2:8833271 Lcy9g1945 Lcy-Chr9:44447168 2.20E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0950 K22048 - csv:101209209 1321.99