Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1629 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCAAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGTCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCCCTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATACTCGACAACGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTGGTGAAGAAGATAGACCGGTGGAACAACCGAAATTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCTGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCTCCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGAACTTGCAGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAACTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCAGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACCCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGCTAACACCTTCAGCAACTCCTGGTGGCGTTGGTCTCACTCCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGACACGCATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGAAATCTTAGCCTAGGATTGGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCACGGCCTCCTACTGCTTCTTTGGAGCTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTCGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTATTAGAGCATGATAATGCGAAGTACCCAATTGACGAAAAGGTCAACAGGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATGGACCTACTGCAGCCATCCCCTCAATAGATGATTTTGAAGAAACTGAGATGGAAGAGGGTGTCACTGATATCATGGAGGAAGCCGAGGAATGTGAGTACACATTTGTTGTGCCAGTGTTGATTTTAGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAGTCCTTAGATGAATTTGTGGAAGCTCACAAAACCTGCTTGAGTGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGCGTTGCTGGAAACCATGAGAAACTAGCTGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGGTATATATTATTATTGGAATTATCACAGCTTTTTTCTCTACATCTTGTGTTCCACTTCTTCCTGGATTGCCTCAGCATTTTCCTCTCTTTAGAAGGAGGCAAGAGGAGGACATTGATTATTGGTTGTTGGATTGCGGTTGCTTATTCCCTCGGGAGTCTACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCGACTTTCAAGCAGATGGACACTGCAGCAACGGAGCTTGAGTGCTTCGAAGCTCTTCAAAAGCAAGAGCTGTCAGCTGCTTCGCACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAACCTTTTGGCGGACTTGGAAAAGATGCAGAAAGTCATGGATGAGCGCAAGGCACAAGCACAAAAGGAAGAAAAAATCGCAGCAGAGAATCATGCTCTTCAGTTGGCTGAGGCTGAGGCTAATCAAACTGTTGGAGAAAATGCTGATAGTTCTGAACCTATGCCCGCATTAGCAGTTGATCAGGAAAACTCTGCCTCATCTCCCAATGAATTAACAGGTGAACAAGTGAACTCGTCCATGGGACATAAACATGAAACTTCTAATGCCATGGATATTGACGCAGAGGCAGAAAATGCAGCGACGAGCTCGGATGTTGGCTTATCTGATAACAAACTACCTTCTGCAGCAGGAGAGAATGCATCATTGCATGACAATGGTTTAGAAGATTCTGATAAAAGTCAAACCATTGATGTTCCTACTCCAGAACTCTCAGGCCCTTCTGCAAATGGCAACCCAGAAGTGACCGTTGCAGTGGAAAATAAAAGCAACGATTCGGTTGATGAAGCAGCTACAGAAAATGCCGAATGTAGTACCGATATTGTTGAGGAAGTCAAAGATGTTGAAACTCAGCAGCCTGTGATTGAAGCTGGAAACTCAGATATGAATTCAACTGATCTGGATTCTGGTGCACCTGTATCTTCTAATGAGGACGATCCTGCCAATAATGATAACATGGAAGCCCCTCGTGGCGAAGGGGAAGGAACGGAATCGAATGCCTAG 3327 44.36 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNREKKKGSKRTGNGPTAAIPSIDDFEETEMEEGVTDIMEEAEECEYTFVVPVLILADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLSDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYEVYIIIGIITAFFSTSCVPLLPGLPQHFPLFRRRQEEDIDYWLLDCGCLFPRESTRSKQSLWPQIEATFKQMDTAATELECFEALQKQELSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKMQKVMDERKAQAQKEEKIAAENHALQLAEAEANQTVGENADSSEPMPALAVDQENSASSPNELTGEQVNSSMGHKHETSNAMDIDAEAENAATSSDVGLSDNKLPSAAGENASLHDNGLEDSDKSQTIDVPTPELSGPSANGNPEVTVAVENKSNDSVDEAATENAECSTDIVEEVKDVETQQPVIEAGNSDMNSTDLDSGAPVSSNEDDPANNDNMEAPRGEGEGTESNA 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23395667 23406275 - Maker00029653 Lcy2g1629 626394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1629 1108 Gene3D - 5 59 - -
Lcy2g1629 1108 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 807 883 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 599 628 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 929 953 - -
Lcy2g1629 1108 Coils Coil 167 187 - -
Lcy2g1629 1108 Pfam Myb-like DNA-binding domain 10 70 - -
Lcy2g1629 1108 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 157 176 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 400 414 - -
Lcy2g1629 1108 Coils Coil 872 908 - -
Lcy2g1629 1108 CDD SANT 10 53 IPR001005 -
Lcy2g1629 1108 Gene3D - 60 114 - -
Lcy2g1629 1108 FunFam CDC5 cell division cycle 5-like 60 120 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 967 1023 - -
Lcy2g1629 1108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 928 953 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 1052 1108 - -
Lcy2g1629 1108 CDD SANT_CDC5_II 55 106 IPR047240 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 382 421 - -
Lcy2g1629 1108 Pfam pre-mRNA splicing factor component 407 646 IPR021786 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 1001 1023 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 213 234 - -
Lcy2g1629 1108 SMART sant 58 105 IPR001005 -
Lcy2g1629 1108 SMART sant 6 55 IPR001005 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 1061 1090 - -
Lcy2g1629 1108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lcy2g1629 1108 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lcy2g1629 1108 FunFam CDC5 cell division cycle 5-like 5 59 - -
Lcy2g1629 1108 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1629 Lcy-Chr2:23395667 Lcy7g0263 Lcy-Chr7:2271018 4.30E-12 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19771 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1629 K12860 - csv:101206265 1699.87