Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g1629 | ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCAAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGTCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCCCTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATACTCGACAACGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTGGTGAAGAAGATAGACCGGTGGAACAACCGAAATTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCTGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCTCCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGAACTTGCAGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAACTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCAGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACCCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGCTAACACCTTCAGCAACTCCTGGTGGCGTTGGTCTCACTCCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGACACGCATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGAAATCTTAGCCTAGGATTGGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCACGGCCTCCTACTGCTTCTTTGGAGCTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTCGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTATTAGAGCATGATAATGCGAAGTACCCAATTGACGAAAAGGTCAACAGGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATGGACCTACTGCAGCCATCCCCTCAATAGATGATTTTGAAGAAACTGAGATGGAAGAGGGTGTCACTGATATCATGGAGGAAGCCGAGGAATGTGAGTACACATTTGTTGTGCCAGTGTTGATTTTAGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAGTCCTTAGATGAATTTGTGGAAGCTCACAAAACCTGCTTGAGTGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGCGTTGCTGGAAACCATGAGAAACTAGCTGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGGTATATATTATTATTGGAATTATCACAGCTTTTTTCTCTACATCTTGTGTTCCACTTCTTCCTGGATTGCCTCAGCATTTTCCTCTCTTTAGAAGGAGGCAAGAGGAGGACATTGATTATTGGTTGTTGGATTGCGGTTGCTTATTCCCTCGGGAGTCTACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCGACTTTCAAGCAGATGGACACTGCAGCAACGGAGCTTGAGTGCTTCGAAGCTCTTCAAAAGCAAGAGCTGTCAGCTGCTTCGCACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAACCTTTTGGCGGACTTGGAAAAGATGCAGAAAGTCATGGATGAGCGCAAGGCACAAGCACAAAAGGAAGAAAAAATCGCAGCAGAGAATCATGCTCTTCAGTTGGCTGAGGCTGAGGCTAATCAAACTGTTGGAGAAAATGCTGATAGTTCTGAACCTATGCCCGCATTAGCAGTTGATCAGGAAAACTCTGCCTCATCTCCCAATGAATTAACAGGTGAACAAGTGAACTCGTCCATGGGACATAAACATGAAACTTCTAATGCCATGGATATTGACGCAGAGGCAGAAAATGCAGCGACGAGCTCGGATGTTGGCTTATCTGATAACAAACTACCTTCTGCAGCAGGAGAGAATGCATCATTGCATGACAATGGTTTAGAAGATTCTGATAAAAGTCAAACCATTGATGTTCCTACTCCAGAACTCTCAGGCCCTTCTGCAAATGGCAACCCAGAAGTGACCGTTGCAGTGGAAAATAAAAGCAACGATTCGGTTGATGAAGCAGCTACAGAAAATGCCGAATGTAGTACCGATATTGTTGAGGAAGTCAAAGATGTTGAAACTCAGCAGCCTGTGATTGAAGCTGGAAACTCAGATATGAATTCAACTGATCTGGATTCTGGTGCACCTGTATCTTCTAATGAGGACGATCCTGCCAATAATGATAACATGGAAGCCCCTCGTGGCGAAGGGGAAGGAACGGAATCGAATGCCTAG | 3327 | 44.36 | MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNREKKKGSKRTGNGPTAAIPSIDDFEETEMEEGVTDIMEEAEECEYTFVVPVLILADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLSDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYEVYIIIGIITAFFSTSCVPLLPGLPQHFPLFRRRQEEDIDYWLLDCGCLFPRESTRSKQSLWPQIEATFKQMDTAATELECFEALQKQELSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKMQKVMDERKAQAQKEEKIAAENHALQLAEAEANQTVGENADSSEPMPALAVDQENSASSPNELTGEQVNSSMGHKHETSNAMDIDAEAENAATSSDVGLSDNKLPSAAGENASLHDNGLEDSDKSQTIDVPTPELSGPSANGNPEVTVAVENKSNDSVDEAATENAECSTDIVEEVKDVETQQPVIEAGNSDMNSTDLDSGAPVSSNEDDPANNDNMEAPRGEGEGTESNA | 1108 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23395667 | 23406275 | - | Maker00029653 | Lcy2g1629 | 626394 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g1629 | 1108 | Gene3D | - | 5 | 59 | - | - | |
Lcy2g1629 | 1108 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 807 | 883 | IPR047242 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER) | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 599 | 628 | - | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 929 | 953 | - | - | |
Lcy2g1629 | 1108 | Coils | Coil | 167 | 187 | - | - | |
Lcy2g1629 | 1108 | Pfam | Myb-like DNA-binding domain | 10 | 70 | - | - | |
Lcy2g1629 | 1108 | ProSiteProfiles | Myb-like domain profile. | 2 | 53 | IPR001005 | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 400 | 414 | - | - | |
Lcy2g1629 | 1108 | Coils | Coil | 872 | 908 | - | - | |
Lcy2g1629 | 1108 | CDD | SANT | 10 | 53 | IPR001005 | - | |
Lcy2g1629 | 1108 | Gene3D | - | 60 | 114 | - | - | |
Lcy2g1629 | 1108 | FunFam | CDC5 cell division cycle 5-like | 60 | 120 | - | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 967 | 1023 | - | - | |
Lcy2g1629 | 1108 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 107 | IPR017930 | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 928 | 953 | - | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 1052 | 1108 | - | - | |
Lcy2g1629 | 1108 | CDD | SANT_CDC5_II | 55 | 106 | IPR047240 | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 382 | 421 | - | - | |
Lcy2g1629 | 1108 | Pfam | pre-mRNA splicing factor component | 407 | 646 | IPR021786 | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 1001 | 1023 | - | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 213 | 234 | - | - | |
Lcy2g1629 | 1108 | SMART | sant | 58 | 105 | IPR001005 | - | |
Lcy2g1629 | 1108 | SMART | sant | 6 | 55 | IPR001005 | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 1061 | 1090 | - | - | |
Lcy2g1629 | 1108 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 2 | 57 | IPR017930 | - | |
Lcy2g1629 | 1108 | ProSiteProfiles | Myb-like domain profile. | 54 | 103 | IPR001005 | - | |
Lcy2g1629 | 1108 | FunFam | CDC5 cell division cycle 5-like | 5 | 59 | - | - | |
Lcy2g1629 | 1108 | SUPERFAMILY | Homeodomain-like | 33 | 106 | IPR009057 | - | |
Lcy2g1629 | 1108 | MobiDBLite | consensus disorder prediction | 113 | 150 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g1629 | Lcy-Chr2:23395667 | Lcy7g0263 | Lcy-Chr7:2271018 | 4.30E-12 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19771 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g1629 | K12860 | - | csv:101206265 | 1699.87 |