Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0944 ATGCTTTACCGAACTCACCACCCATTTTTCTTCCCAAACAACCCCTTTACTTTCTTCTCTCTCTCTCTCTCTCTTCTTTTTCCTTCTCTTCTCTGCAACCACTCTCCAAAACCAACGTCACAACACGCCCCTCTTATCCTTTCCTCCCCGTATTCAGGCTCCTTGCCGGCCATGGAATGTCTTGATGCGGCTCTCAAAACCTGTTTCCGCAACGATATTTCCCTTCAATTGAGCCCTCAACTCTCTTTTCACGATCATACTGCCTCTTTTCATCCCCAGAATGTCGTCTCCTCTGATGATTTCTTCGTTGATGAACTCCTTGATTTCTCTAATGACGATGAGTTTGTTCAACAAGACGAGATTGCCCATGAGGATGATGATGATAAGGCCTCTGTTTCCCTTTCCATTTCGCTCTCCGCTCAAGAACAACGCCAGAACTCCGTACTTTCCGACCTTCCTTCTTTGCCCTCCGGCGCGGCGGATGATTTGGCCAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCCTTCTCTGGATTCTCCGCTCCGTTCCCCTCCGCCGGAATTTCTTCGTCCATGAAATCGTCCGCTGCGGAGGAGCAACCGGAGAACGACGGTTCCGTTTCGCCACCGGAGCCCTGTTTCAAGACGCCCGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTCGCTTCACCGTCGTTGACCGAGTCTTCCTCCAGTTCCACGACGTCCTCCTCTTCCTCGTCGCCGGCGGGTCCTTGGCTTATAATTTCCGACCGATTCGAACCGGAAATTCCGGTAACCAAGAAACCCAAGAGAAAATCGCCGCTGGAAAAGGCCAGAACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTCGACTTTTACCCGAATACCGACCCGCCTGTAGCCCGACTTTCTCCAGCGAATTGCACTCCAACCATCACCGGAAAGTCCTCGAGATGCGCCGGAAAAAGGAAACCACCGCCCCCGCCGAGTTTTTGACCTCAGAAAAAGAATAA 1140 53.6 MLYRTHHPFFFPNNPFTFFSLSLSLLFPSLLCNHSPKPTSQHAPLILSSPYSGSLPAMECLDAALKTCFRNDISLQLSPQLSFHDHTASFHPQNVVSSDDFFVDELLDFSNDDEFVQQDEIAHEDDDDKASVSLSISLSAQEQRQNSVLSDLPSLPSGAADDLANLEWLSHFVEDSFSGFSAPFPSAGISSSMKSSAAEEQPENDGSVSPPEPCFKTPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPAGPWLIISDRFEPEIPVTKKPKRKSPLEKARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTAPAEFLTSEKE 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9740345 9742371 + Maker00030143 Lcy6g0944 635388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0944 379 MobiDBLite consensus disorder prediction 359 379 - -
Lcy6g0944 379 ProSiteProfiles GATA-type zinc finger domain profile. 294 330 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 SMART GATA_3 294 348 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 FunFam GATA transcription factor 290 375 - -
Lcy6g0944 379 MobiDBLite consensus disorder prediction 242 262 - -
Lcy6g0944 379 Gene3D - 292 369 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy6g0944 379 MobiDBLite consensus disorder prediction 188 226 - -
Lcy6g0944 379 PANTHER GATA TRANSCRIPTION FACTOR 91 366 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lcy6g0944 379 CDD ZnF_GATA 299 347 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 293 356 - -
Lcy6g0944 379 ProSitePatterns GATA-type zinc finger domain. 300 325 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 Pfam GATA zinc finger 300 334 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 MobiDBLite consensus disorder prediction 242 261 - -
Lcy6g0944 379 MobiDBLite consensus disorder prediction 188 203 - -
Lcy6g0944 379 MobiDBLite consensus disorder prediction 276 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0944 Lcy-Chr6:9740345 Lcy8g1171 Lcy-Chr8:38086267 9.55E-51 dispersed
Lcy11g2108 Lcy-Chr11:44535172 Lcy6g0944 Lcy-Chr6:9740345 2.17E-33 transposed
Lcy1g0710 Lcy-Chr1:6075074 Lcy6g0944 Lcy-Chr6:9740345 2.67E-08 wgd
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0944 Lcy-Chr6:9740345 5.61E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20284 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0944 - - - 0.0