Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2153 ATGTTTCTGGCTTCCAACGCCCTTGTGATGAACACGCCGTCTCCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCCTCGTCGTTGGCGCCGCCGTCTGACAAGGCCAAGCCGAGAAGCTCGCCGACTACCGATTCCGGTTGCAGTGGGAGAAGTGACTTGAGCCATGAGAATGGTGTCTTCCGCTTAGGGTTTGAAGTGGGGGATGTGGGTCTTCTTCCTCCTCCTCCTCGGCGGCATCACCAAGCTTGTAACGTCCACGGCCGCCGCGACTTCAAACGAAGCGGCGGCGGAGTCGGGTGTGGAGTGAGGAGAAGCATCCGAGCTCCTAGAATGAGATGGACTACGACTCTTCACGCTCATTTTGTACACGCGGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACCGAACAGTAAAGAATACTGTCAAGGGAACAGATGATTGTGGAAGGACTGAGCTTGAAGCAGATGCTGTTTTATCTTCATTATCTGTTAAAAAATCTAACTTTGAATCGCCTCAGTTGCAGAGAATCCAAAGAAGTAGTTTGGTAGCACCAATGCACAAGAGTTGCGAGAGGACCAAGTCAAACGGCGACACTTTCGCTAAATCTAGAGGGATGAAGGTGGATGGAATCAATAGAGATTATCACGAGGCTCTCAGCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTTGATTATGGTGACACAAATGAGCTTACCCTTCTCAATTGCTAA 831 49.34 MFLASNALVMNTPSPLPDLSLQISLPSSLAPPSDKAKPRSSPTTDSGCSGRSDLSHENGVFRLGFEVGDVGLLPPPPRRHHQACNVHGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRTELEADAVLSSLSVKKSNFESPQLQRIQRSSLVAPMHKSCERTKSNGDTFAKSRGMKVDGINRDYHEALSMQRINLEFTLGRPSWQFDYGDTNELTLLNC 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46140999 46145042 + Maker00007226 Lcy9g2153 643269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2153 276 SUPERFAMILY Homeodomain-like 107 164 IPR009057 -
Lcy9g2153 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 110 163 IPR006447 GO:0003677(InterPro)
Lcy9g2153 276 MobiDBLite consensus disorder prediction 37 53 - -
Lcy9g2153 276 Pfam Myb-like DNA-binding domain 111 162 IPR001005 -
Lcy9g2153 276 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 12 263 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Lcy9g2153 276 Gene3D - 109 166 - -
Lcy9g2153 276 MobiDBLite consensus disorder prediction 22 53 - -
Lcy9g2153 276 FunFam Myb family transcription factor 108 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2360 Lcy-Chr5:46438299 Lcy9g2153 Lcy-Chr9:46140999 1.24E-30 dispersed
Lcy6g2249 Lcy-Chr6:47099200 Lcy9g2153 Lcy-Chr9:46140999 4.20E-32 dispersed
Lcy7g1497 Lcy-Chr7:26148831 Lcy9g2153 Lcy-Chr9:46140999 1.21E-18 dispersed
Lcy9g1476 Lcy-Chr9:39833580 Lcy9g2153 Lcy-Chr9:46140999 2.13E-16 dispersed
Lcy13g2020 Lcy-Chr13:39171714 Lcy9g2153 Lcy-Chr9:46140999 1.01E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20725 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2153 - - - 0.0