Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2153 | ATGTTTCTGGCTTCCAACGCCCTTGTGATGAACACGCCGTCTCCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCCTCGTCGTTGGCGCCGCCGTCTGACAAGGCCAAGCCGAGAAGCTCGCCGACTACCGATTCCGGTTGCAGTGGGAGAAGTGACTTGAGCCATGAGAATGGTGTCTTCCGCTTAGGGTTTGAAGTGGGGGATGTGGGTCTTCTTCCTCCTCCTCCTCGGCGGCATCACCAAGCTTGTAACGTCCACGGCCGCCGCGACTTCAAACGAAGCGGCGGCGGAGTCGGGTGTGGAGTGAGGAGAAGCATCCGAGCTCCTAGAATGAGATGGACTACGACTCTTCACGCTCATTTTGTACACGCGGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACCGAACAGTAAAGAATACTGTCAAGGGAACAGATGATTGTGGAAGGACTGAGCTTGAAGCAGATGCTGTTTTATCTTCATTATCTGTTAAAAAATCTAACTTTGAATCGCCTCAGTTGCAGAGAATCCAAAGAAGTAGTTTGGTAGCACCAATGCACAAGAGTTGCGAGAGGACCAAGTCAAACGGCGACACTTTCGCTAAATCTAGAGGGATGAAGGTGGATGGAATCAATAGAGATTATCACGAGGCTCTCAGCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTTGATTATGGTGACACAAATGAGCTTACCCTTCTCAATTGCTAA | 831 | 49.34 | MFLASNALVMNTPSPLPDLSLQISLPSSLAPPSDKAKPRSSPTTDSGCSGRSDLSHENGVFRLGFEVGDVGLLPPPPRRHHQACNVHGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRTELEADAVLSSLSVKKSNFESPQLQRIQRSSLVAPMHKSCERTKSNGDTFAKSRGMKVDGINRDYHEALSMQRINLEFTLGRPSWQFDYGDTNELTLLNC | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46140999 | 46145042 | + | Maker00007226 | Lcy9g2153 | 643269 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2153 | 276 | SUPERFAMILY | Homeodomain-like | 107 | 164 | IPR009057 | - | |
Lcy9g2153 | 276 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 110 | 163 | IPR006447 | GO:0003677(InterPro) | |
Lcy9g2153 | 276 | MobiDBLite | consensus disorder prediction | 37 | 53 | - | - | |
Lcy9g2153 | 276 | Pfam | Myb-like DNA-binding domain | 111 | 162 | IPR001005 | - | |
Lcy9g2153 | 276 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 12 | 263 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro) | |
Lcy9g2153 | 276 | Gene3D | - | 109 | 166 | - | - | |
Lcy9g2153 | 276 | MobiDBLite | consensus disorder prediction | 22 | 53 | - | - | |
Lcy9g2153 | 276 | FunFam | Myb family transcription factor | 108 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2360 | Lcy-Chr5:46438299 | Lcy9g2153 | Lcy-Chr9:46140999 | 1.24E-30 | dispersed | |
Lcy6g2249 | Lcy-Chr6:47099200 | Lcy9g2153 | Lcy-Chr9:46140999 | 4.20E-32 | dispersed | |
Lcy7g1497 | Lcy-Chr7:26148831 | Lcy9g2153 | Lcy-Chr9:46140999 | 1.21E-18 | dispersed | |
Lcy9g1476 | Lcy-Chr9:39833580 | Lcy9g2153 | Lcy-Chr9:46140999 | 2.13E-16 | dispersed | |
Lcy13g2020 | Lcy-Chr13:39171714 | Lcy9g2153 | Lcy-Chr9:46140999 | 1.01E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20725 | None | None | None | None | Lcy | TF |
Pathway information
