Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00595 CAGAACCAAAGCATTTGGAGCCATTTTCTCAGTTCATTTCAAGCTCAGTTTCTTCATTTGGCTATGGCTTCCATTCATTTCATCTTCTTTTCATTCTTTCTCTTCTTCCACTTTCTTTCCCTCTCTCACTCTGCAACCATCACACTCCAAAACAATTGCACTCACACCATTTGGCCCGGCATTTTATCCGGCGCCGGAACCGCCCCTCTCTCCACCACCGGCTTCTCCCTCCTCCCCGCTGCCGTCTCCGTCCTCTCCGTCCCCCCCTCCTGGTCCGGCCGCATTTGGGCTCGAACCTACTGCTTCACCGACCCCTCCTCCGGCCGCTTCTCCTGCGCCACAGCCGACTGCGGCTCCGGCACCGTCGCGTGCGGCGGAGCCTGCGCTGCCCCACCCGCCACTCTTGCCGAATTCACCCTTAACGGCGGCGGCGGGTTTGATTTCTACGACGTGAGCCTCGTGGACGGGTACAACATCGCGATGCAGATCGTGCCGGTGGGTGGGAAGTCGGGAAACTGTACGGCCACCGGTTGCATTGCGGATTTGAACGGGGATTGCCCACCGGAACTGCAGGTGGTGATGGGCGGGGGAGAGGGGAGCGTGGCGTGTAAAAGCGCGTGTGTGGCGTTTGAGAAAGCGGAATATTGCTGCAGTGGGGCGTTTGCAAATCCAAACACGTGCAAGCCGAGTAATTACTCAAAATTTTTCAAGACCAATTGCCCGTTGGCTTACAGTTACGCGTTCGATGACGGAACCAGCACTTTCACCTGTGTGTCAGCCAATTATGTCATTACTTTTTGCCCTTCTTCCTCTTTACCCAGTTTGAAGGCATCTAGTGAACCACAACCGCAAGCGGCTGACATTTCAGGTTGCCGGCGTCGCACTGCACCGCCGTCCTTGGGCATTTTCACCGCCGTGTGGGTGGCCGTTTGGCGGCTGCGGCATCTGTTTCTACACTGCCAAAATCACTGA 972 56.38 QNQSIWSHFLSSFQAQFLHLAMASIHFIFFSFFLFFHFLSLSHSATITLQNNCTHTIWPGILSGAGTAPLSTTGFSLLPAAVSVLSVPPSWSGRIWARTYCFTDPSSGRFSCATADCGSGTVACGGACAAPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVPVGGKSGNCTATGCIADLNGDCPPELQVVMGGGEGSVACKSACVAFEKAEYCCSGAFANPNTCKPSNYSKFFKTNCPLAYSYAFDDGTSTFTCVSANYVITFCPSSSLPSLKASSEPQPQAADISGCRRRTAPPSLGIFTAVWVAVWRLRHLFLHCQNH 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4750179 4751881 - Lsi01G005950.1 Lsi01g00595 653253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00595 323 ProSiteProfiles Thaumatin family profile. 44 268 IPR001938 -
Lsi01g00595 323 CDD TLP-PA 46 267 - -
Lsi01g00595 323 ProSitePatterns Thaumatin family signature. 108 124 IPR017949 -
Lsi01g00595 323 PANTHER - 40 282 - -
Lsi01g00595 323 Pfam Thaumatin family 51 268 IPR001938 -
Lsi01g00595 323 SUPERFAMILY Osmotin, thaumatin-like protein 45 269 IPR037176 -
Lsi01g00595 323 SMART tha2 47 268 IPR001938 -
Lsi01g00595 323 Gene3D Thaumatin 45 268 IPR037176 -
Lsi01g00595 323 PIRSF PR5 3 306 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 258 267 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 147 163 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 46 58 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 94 105 IPR001938 -
Lsi01g00595 323 PANTHER OS03G0233200 PROTEIN 40 282 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00595 Lsi07g01100 CCT
Lsi01g00595 Lsi07g01100 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00595 Lsi-Chr1:4750179 Lsi07g01100 Lsi-Chr7:16405759 6.67E-115 dispersed
Lsi01g00594 Lsi-Chr1:4740368 Lsi01g00595 Lsi-Chr1:4750179 1.06E-81 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00595 - - cmax:111497364 478.018