Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00620 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGTGCAATCTGTGACACAAAGGTACACATGTGCAATAAGCTTGCTAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGACGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTTGGAGGTAAAAGGATGCACAAGAGATACCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATAAACAAAATGATGTGAAGGACCTAAATGTAAAACCGATGGAACAGGTTGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCATGAAGAATTGAGGGTCTCAGATGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTAAACATCTAA 507 41.22 MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDVKDLNVKPMEQVEKVRSQNEERGEIEKHEELRVSDVKKDYSNGDGHSKRPNKVIDLNI 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4986878 4988713 + Lsi01G006200.1 Lsi01g00620 653278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00620 168 CDD Bbox1_BBX-like 4 47 - -
Lsi01g00620 168 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Lsi01g00620 168 MobiDBLite consensus disorder prediction 121 161 - -
Lsi01g00620 168 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Lsi01g00620 168 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Lsi01g00620 168 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 167 - -
Lsi01g00620 168 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi01g00620 168 MobiDBLite consensus disorder prediction 121 168 - -
Lsi01g00620 168 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 167 - -
Lsi01g00620 168 Gene3D Classic Zinc Finger 1 95 - -
Lsi01g00620 168 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi01g00620 168 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00620 Lsi-Chr1:4986878 Lsi07g00290 Lsi-Chr7:3106367 1.02E-24 dispersed
Lsi07g00267 Lsi-Chr7:2909441 Lsi01g00620 Lsi-Chr1:4986878 6.18E-72 transposed
Lsi01g00620 Lsi-Chr1:4986878 Lsi10g00420 Lsi-Chr10:6364840 1.07E-37 wgd
Lsi01g00620 Lsi-Chr1:4986878 Lsi08g01348 Lsi-Chr8:21779307 3.75E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24594 PF00643 zf-B_box 3.60E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00620 - - csv:101206016 334.724