Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00643 ATGTCATCTGAACTCCATACAGTCGAAAGCCCTAGAAAATGGCGCTTCACATGGGAAGCGCAATCCCATATACCAACCCTACGTTTATTGCTCTTCGATTCCTATACCAATCCTTCTCTTCAGTGTCAGAATCTCAAGGTTCATCTCAATCTCCAGCAGTCCGTCGTATGTGTGGCTTGGTTACAAGACCTCGATATGTCGATTCGAGTTCCTATGCCTCCGGTTTTGGTTGATGCTGAGTCGCCTCTGAGTTTTAGAGCTTTCGAAGACCACATTGAGGTCAAGCTCGTCTTGCTTCTTCCGGTTGATCACCCAATTATTCTCAACTTCGACAATGTGCCGGACTCCTCCCAAGAGCGAGGAAATAGCCACTCCAAGGCGTCGAAGCCACTCTCGATGGATTCTGATCAAATCAGTTTATCCCGCAGTGGTGGCGTCCACTTTTATTGCAGAAATTGTTCTTTCAGGCTGAGCAAGTCCCCTCTCAGAGATTTTGTTGAAATGCCATCAGTCAATTGGCGAGAGGTGGCTGATAACTGGTTTGGCTCTTGCTGCTGCTCTTTCGGGGGGATAAGCGAGAAGCTGGTTACTAGGTACACAAATTCCTATAGATGTGCAAAGGGTGTCTGCCTACTCACTTTAACGACTATTACTCTTTCCAAGGATGACCTTATTGGACAAATGTTCCCGGACTATGATGGGACCCGAGAATTCAAGGATGAATCAGATTTTTCTGATGGCAATTGGTTAACTGAAGCTAAGCAGGAATCAGAGAAGGTAAAATCTAAGCAGTTCAATTATAAAAACTCTGTTGCAAACATGGAGGGTAATGCTGCTGAGAAGGGAAGTGATGAAGTTGATTCACCTATTGTGGCTCCAATTCCTGACTGCTGTCATCATGAAGAAAGTAATGTACTACATCATCTTGATAGGGATTGCATGCATCACACATGTGGCACATATAACTTAGACTCAAAGCCTAGTAATACTGTAGATATTTCGGACGATCAGAGATCATTTCTTAATGGTTTTCTTGGAAATATCTTTATGGCTAGACTGTCAAATCTTTCAGCAGATTTTGAGTGGGCTGAGTTCTTTTGCCCCCAGTGCTCAACTCTGATTGGGGCTTACCCTTGCAGAAATGGCTGTGGACCTACAGACGGTGGAGTTCGACTTTTTAAATGTTATGTCTCAACATGTCTATCAGCTGAAGCAGGAAATTTGTTAAGGGAGTACACGTTGGAAAGAATGTTTGCAAATCAGCTACTGGAAAGTGCAAATGAAGAATCATCATTTCGTACTGTGGTCAAGGAGTTGAAAACCAAGTCTCCCATGCTGCACGTTGTTCTCATCAATTCAAATTCTTGGTCGTGTAGTGGTTATTGTTTGGGCATGGAGGATACTGCAGAAGTTGTTCCAAAGGTGGACTTAAATCCAATCATCAAGGTGCTATTCTCAGATTGCAACAAAAGTGCAGAATCTCACTTGAGGAAACTTGAAGAGTGGGTGACAAAAGATATAGCAGAAGAAGTTTTTATGTTAGCCCATCAAATAGAGGAATTAGTTGGAATCCTAGTTTCAAGAAATGATACTCTTCCATCTTCATGTTCTTCCCTTGATGGTTTAACTTTGACATCTATCCTGAGGTAA 1650 42.79 MSSELHTVESPRKWRFTWEAQSHIPTLRLLLFDSYTNPSLQCQNLKVHLNLQQSVVCVAWLQDLDMSIRVPMPPVLVDAESPLSFRAFEDHIEVKLVLLLPVDHPIILNFDNVPDSSQERGNSHSKASKPLSMDSDQISLSRSGGVHFYCRNCSFRLSKSPLRDFVEMPSVNWREVADNWFGSCCCSFGGISEKLVTRYTNSYRCAKGVCLLTLTTITLSKDDLIGQMFPDYDGTREFKDESDFSDGNWLTEAKQESEKVKSKQFNYKNSVANMEGNAAEKGSDEVDSPIVAPIPDCCHHEESNVLHHLDRDCMHHTCGTYNLDSKPSNTVDISDDQRSFLNGFLGNIFMARLSNLSADFEWAEFFCPQCSTLIGAYPCRNGCGPTDGGVRLFKCYVSTCLSAEAGNLLREYTLERMFANQLLESANEESSFRTVVKELKTKSPMLHVVLINSNSWSCSGYCLGMEDTAEVVPKVDLNPIIKVLFSDCNKSAESHLRKLEEWVTKDIAEEVFMLAHQIEELVGILVSRNDTLPSSCSSLDGLTLTSILR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5181889 5185322 - Lsi01G006430.1 Lsi01g00643 653301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00643 549 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 118 537 IPR019193 -
Lsi01g00643 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER 15 544 IPR019193 -
Lsi01g00643 549 Coils Coil 409 429 - -
Lsi01g00643 549 MobiDBLite consensus disorder prediction 115 136 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00643 Lsi07g00244 CCT
Lsi01g00643 Lsi07g00244 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00643 - - csv:101204887 1019.61