Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00707 ATGGCTACTTCATTGCCTTTACCCGAACTTATTTTCGTCTCACCGAAGCGTCTTCTATCTCCTTACAGTCCCAGATGTTCGGTCTATAGGATTCCTCTCTCTAGAACTCGTAGGTTTGGTGTTCTTCTTCGCACGAAGCTCCGGGCTGTCAGAGAAGACGGTGTGGTTGCTGAAGAGAGGGAAAATGAACTGATCAAGGAAGTTAATGGATATGGACTTGGAAGTAATGGAGCTGCTTACAATGCGAATGGTGATTACAGGTACAATGGTTGGGTTAATGGCGGAGTTACGGCTGTGGAGAGTGAGAGTGGTGGAAGCAATGGGACCTTGGTGAAGTATGTTAATGGCAATGGTGTTGCTGCGACGGTGGTGGGAGAAATTCAAGCTTCGGAGTCAGTGGAGGAGGGGAGGAAGAAGAGGGTTGAGGAGATTGGTAAAGAAGAGGCTTGGTTTAAGCAGAGTGACCAGCAACAGATCGAGGTTTCTGTGGCACCTGGTGGACGCTGGAATAGATTTAAAACATATTCAACAATTCAGAGAACCTTGGAGATATGGGGATTTGTTTTTAATTTTATCATCAAGGCTTGGCTTAACAATCAGAAATTTACTTATCGAGGAGGAATGACAGAGGAGAAAAAGGTCGCTAGAAGAAAGATCCTAGCTAAGTGGTTGAAAGAAAACATTTTGAGATTAGGTCCAACTTTTATTAAAATTGGTCAGCAATTTTCCACTAGAGTGGACATTCTACCACAAGAATATGTTGACCAGTTGTCAGAGCTTCAGGATCAAGTTCCTCCTTTCCCATCTGAGACAGCAATATCAATAGTTGAAGAAGAGCTTGGAGGTCCTGTGGCCAATATATTTGAACGGTTTGATCAGGAACCGATAGCTGCTGCTAGTCTTGGTCAGGTTCATCGTGCAAGATTGAAGGGGCAGGAAGTTGTGGTGAAAGTACAGAGGCCAAGTCTAAAGGAACTCTTTGATATTGATCTTAAGAACCTAAGGGTCATAGCAGAATACCTTCAAAAACTTGACCCAAAGTCAGATGGTGCAAAAAGAGATTGGGTTGCTATATATGATGAGTGTGCAAACGTCCTGTATCAGGAGATAGATTACACCAAGGAAGCAGCTAATGCTGAGCGGTTTTCAAGCAACTTTAGAAACTTGGACTATGTGAAAGTCCCATCAATATACTGGGACTATACTACCCCACAGGTTCTGACTATGGAATATGTTCCTGGAATTAAAATAAATAAGATTAAAGCTCTGGATCAACTAGGCATTGATCGAAAACGGTTAGGTCGTTATGCTGTTGAATCTTACCTGGAGCAAATTCTGTCGCATGGATTCTTCCATGCAGATCCTCATCCTGGGAACATTGCTGTAGATGACGTCAATGGAGGAAGGTTGATCTTTTACGATTTTGGAATGATGGGAAGTATCAGTTCAAATATCAGAGAGGGTTTGCTGGAAACGTTCTATGGAGTGTATGAGAAAGATCCAGACAAGGTTCTTCAAGCAATGGTTCAAATGGGGGTTCTTGTGCCTACTGGAGATATGACGGCTGTTAGACGAACAGCTCAATTCTTCCTCAACAGTTTTGAAGAACGTCTGGCTGCACAGAGAAGGGAGAGAGAGATGGCAACCGCAGAACTTGGTTTTAAGAAACCATTGACAAAGGAGGAAAAGTTAATGAAAAAAAAGGAACGCCTAGCTGCAATTGGGGAAGATCTATTAGCCATTGCAGCGGATCAACCATTTCGGTTTCCTGCCACATTCACATTTGTTGTTAGAGCATTTTCAGTATTAGATGGCATTGGGAAAGGCCTTGACCCACGATTTGACATTACTGAAATTGCCAAGCCATATGCTCTGGAATTACTGAAGTTTCGGGAAGCTGGAGTTGAGGTTGCCTTGAAGGATTTCAGAAAGAGATGGGACAGGCAGTCTCGTGCGTTCTATAACTTATTTAGACAGGCCGAAAGAGTTGAAAAACTTGCTGACATTATCCAAAGACTGGAGCAAGGTGATCTCAAGCTTAGAGTTCGGGCTTTGGAATCTGAAAGAGCATTCCAACGTGTTGCAACAGTTCAGAAGACTCTAGGAAATGCAATTGCTGCTGGAAGCCTAATCAACCTTGCAACAATATTATATATCAACTCCATTCGGATGCCTGCCACTATTGCCTACATCTTTTGTGCCTTTTTTGGGTTTCAAGTGCTCTTCGGTCTTATCAAAGTCAAAAGATTAGATGAACGGGAGAGGTTGATAACAGGAACCGCTTGA 2286 43.0 MATSLPLPELIFVSPKRLLSPYSPRCSVYRIPLSRTRRFGVLLRTKLRAVREDGVVAEERENELIKEVNGYGLGSNGAAYNANGDYRYNGWVNGGVTAVESESGGSNGTLVKYVNGNGVAATVVGEIQASESVEEGRKKRVEEIGKEEAWFKQSDQQQIEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFNFIIKAWLNNQKFTYRGGMTEEKKVARRKILAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAISIVEEELGGPVANIFERFDQEPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAERFSSNFRNLDYVKVPSIYWDYTTPQVLTMEYVPGIKINKIKALDQLGIDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMVQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSRAFYNLFRQAERVEKLADIIQRLEQGDLKLRVRALESERAFQRVATVQKTLGNAIAAGSLINLATILYINSIRMPATIAYIFCAFFGFQVLFGLIKVKRLDERERLITGTA 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5651700 5659953 + Lsi01G007070.1 Lsi01g00707 653365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00707 761 Gene3D Transferase(Phosphotransferase) domain 1 293 495 - -
Lsi01g00707 761 Pfam ABC1 atypical kinase-like domain 259 507 IPR004147 -
Lsi01g00707 761 PANTHER ABC TRANSPORTER-LIKE PROTEIN 73 759 - -
Lsi01g00707 761 SUPERFAMILY Protein kinase-like (PK-like) 261 503 IPR011009 -
Lsi01g00707 761 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 73 759 - -
Lsi01g00707 761 Coils Coil 531 551 - -
Lsi01g00707 761 CDD ABC1_ADCK3-like 260 508 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00707 Lsi06g00689 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00365 Lsi-Chr1:3227997 Lsi01g00707 Lsi-Chr1:5651700 3.19E-32 dispersed
Lsi01g00707 Lsi-Chr1:5651700 Lsi10g00040 Lsi-Chr10:608597 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00707 - - csv:101215926 1405.19