Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lsi02g00194	ATGGGCAGAGCTTCAGAGTGCGAATTATGCATTCGAACCGTCGGCGGCGATTTGGAGTCTACAAATGGGGGCTGTAGAATGAAGATAGAAGTGATGGTTACGATAGAGTGGTTGAAAGAAGGTATAAAAGAGAGGAAAAGTTTAGTGGAGAAGGCTGTGAAATGGGGTTTCGATGTGGAATACGGGAATTGGTATAAGGAAGCTTGTGATGAATGCAATGAAAACGGAGGCAAATGTGGAGGGAACAACAGATATCCATATTACTGCATTTGTAAGAACGGCGTTGCTAATTCTTACGACTGTAAAGCTGCTCTTCCTCGTCTTCCTCCTCCTGCCCCTCATATTATTAAACGATTGTTCGAAAATAACTACAGAAAAGTTGAGCATTTCATGAATGAAGTTGAAATCCTTACTCGTTTGCGTCACCCACATCTTGTCACCCTTTATGGATGCACCTCTCGACGATCCCGTGAACTCTTGTTGGTTTATGAGTTTGTACCGAACGGTACGGTTGCCGATCATCTTCATGGCATCCAAGCAAGACCGGGTGAGCTTCCATGGCTTACAAGGTTCAAGATTGCCATAGAGACAGCAAGTGCTCTGGCTTTTCTCCATGCTTCTGAGACGATCCACCGCGATGTTAAAACCACCAACATTCTCGTTGACAACAACTCCGATGTTAAAGTCGCCGATTTCGGACTGTCTCGACTTTTTCCAACGCAGGCGACGCATGTTTCAACTGCACTACAAGGAACTCCGGGATATGTTGATCCAGAGTATTACGAATGTTATCAACTTACGAATAAAAGTGACGTCTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGATATCATGAGGCATAGGCATGAGATTAACTTGTCGACGATGGCGATCAACAAGATCCAAAACGACGAATTACACGAGTTCGTAGACCAATCTCTTGGATTTAAAACAGATGAAAGGATCAGAGACATGATATGCAGAGTTGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGGCCTTCAATGTTGGAGGCTCTAGAAATTCTGAAGAATATAGAGAGTAGAAGTTGTGGCAAAGAGAAAGCACAATCCCCAGATTCTGTCATTGTGCCTTGGATTACCAAAACTTCAACACCAAATGGTAGTGGGTGA	1188	43.86	MGRASECELCIRTVGGDLESTNGGCRMKIEVMVTIEWLKEGIKERKSLVEKAVKWGFDVEYGNWYKEACDECNENGGKCGGNNRYPYYCICKNGVANSYDCKAALPRLPPPAPHIIKRLFENNYRKVEHFMNEVEILTRLRHPHLVTLYGCTSRRSRELLLVYEFVPNGTVADHLHGIQARPGELPWLTRFKIAIETASALAFLHASETIHRDVKTTNILVDNNSDVKVADFGLSRLFPTQATHVSTALQGTPGYVDPEYYECYQLTNKSDVFSFGVVLVELISSKPAVDIMRHRHEINLSTMAINKIQNDELHEFVDQSLGFKTDERIRDMICRVAELAFQCLQSVRDTRPSMLEALEILKNIESRSCGKEKAQSPDSVIVPWITKTSTPNGSG	395

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	1670999	1673189	-	Lsi02G001940.1	Lsi02g00194	654936

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lsi02g00194	395	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2	17	97	-	-
	Lsi02g00194	395	SMART	serkin_6	87	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lsi02g00194	395	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2	116	378	-	-
	Lsi02g00194	395	Gene3D	Phosphorylase Kinase; domain 1	101	166	-	-
	Lsi02g00194	395	ProSiteProfiles	Protein kinase domain profile.	87	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lsi02g00194	395	SUPERFAMILY	Protein kinase-like (PK-like)	114	373	IPR011009	-
	Lsi02g00194	395	Pfam	Wall-associated receptor kinase C-terminal	20	93	IPR032872	-
	Lsi02g00194	395	Gene3D	Transferase(Phosphotransferase) domain 1	167	382	-	-
	Lsi02g00194	395	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	116	378	IPR044652	-
	Lsi02g00194	395	Pfam	Protein tyrosine and serine/threonine kinase	116	359	IPR001245	GO:0004672\|GO:0006468
	Lsi02g00194	395	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	17	97	IPR044652	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Lsi02g00194	Lsi06g01317	CCT
	Lsi02g00194	Lsi06g01317	ECH

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Lsi02g00194	Lsi-Chr2:1670999	Lsi02g00205	Lsi-Chr2:1712814	1.13E-173	dispersed
	Lsi02g00194	Lsi-Chr2:1670999	Lsi02g00196	Lsi-Chr2:1680165	3.17E-26	proximal
	Lsi02g00194	Lsi-Chr2:1670999	Lsi06g01317	Lsi-Chr6:23754335	4.58E-131	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	83332	PF07714	PK_Tyr_Ser-Thr	2.90E-40	CL0016	Lsi	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lsi02g00194	-		-	csv:101208057	484.567