Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00307 ATGCAAGAAGAGCAATTGGAATCCGCTCGAGCAGAAATGGGGGAAGTGAAGGAAGAAAACCAGAGACTAAAACATAGTTTAAACCAAATAATGAAGGATTATGAAGCCCTAAAAATGCAATTTCTAGGGATTGTTGGACAAGAATCCAAGAAATTACCAGATCAAGACGACATGTCGAATAAGGAACAACAACACGATGACGATCAAATCGAACTGGTTTCACTAACACTTGGGAGATTTCCCGTGGCAGAGAAGAAGAAGGTGGTCGATGAAAAAACCTCAGTGAATATTATTATTGGTGGCGACGATGAAGAAGCCGCCGTTAAAGAGGCGTTATCTCTCGGTTTGAATTGCAAATTCAAACGGGAAGAATCAATGACGGCCGTCGTTAAAGAAGTCGATTCTCCGAAAAGTTTCGATCACGAGACGAAGGAGGAAGCTGGAGAGACGAATTGGCCACCGAATAAGGGGGTGAAGACGATGAGAAGTGTTGAAGATGATGTTACGCCACCGAATCCGCCCAAACGCGCTAGGATGAATGACGGTTGCCAATGGAGGAAATACGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATACTATCGTTGCACAGGCTCGCCGACATGCCCCGTTAGAAAACAAGTCCAAAGATGCGCTGACGACATGTCGATCTTAATCACCACCTATGAAGGTAATCACAACCACCCATTACCTGCCTCCGCCAACGCCATGGCCTCCACCACCTCCGCCGCAGCCTCCATGCTCCTCTCAGGCTCCACCACCTCCACGGCCGCGGCCAGCTCCTCCTCATCCACTACTACAAATAATCTCCACGGCTTAAACTTTTACCAAAATAATTCTAAACCCAATTTTTACTTACCCAATAATTCTTCTATCATTTCATCCACTTCCCCAACTCACCCCACAATCACTTTGGACCTCACTTCAAATCCTTCTTCCTCTTCCTCAAATTCCTCGACCCATTTTGGTAAATTCACACCTAATTTTCCTAATTCTCGTTACCCTTTTACTAGCCAACTTGATTTCGGATCTTCTAGAAACAATGTGTTGTCGTGGAATAACGGCCTTCTAAGTTACAACAGAAATAACCACCCAACTACTACTACCACCACCAATAATATCTATCAAAATTACATCCAACAACGCCACCCTGCCACGTCACTGCCACATCAGCAACCGCCCTTACCCGACACTATAGCCGCCGCTACCAAGGTCATTACGGCAGATCCGAGCTTTCAATCTGCTCTTGCCGCTGCTCTTACGTCGATCATCAGTACTGGGGGTACTAGTGCTGGCCCCACCAAGTCATCGTCGACAAGAGGGGAACAATCGTTGTTTCAGTTGATGGCGGCGACAACGACGACAAATAAAGGAAATGGATGTGGGACGAGCTTTTTGAACAATATTACGACACCGACAACAACGACGAGTAATTCGCCGCCGACGGGGAATATGGTGTTCGTTCCGACGAGTTCGTTGCCGTTTTCGAATTCGAAGAGTGCATCCGCGTCTCCAGGTGATCATATTGATCTTACCAATTAA 1569 46.46 MQEEQLESARAEMGEVKEENQRLKHSLNQIMKDYEALKMQFLGIVGQESKKLPDQDDMSNKEQQHDDDQIELVSLTLGRFPVAEKKKVVDEKTSVNIIIGGDDEEAAVKEALSLGLNCKFKREESMTAVVKEVDSPKSFDHETKEEAGETNWPPNKGVKTMRSVEDDVTPPNPPKRARMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASANAMASTTSAAASMLLSGSTTSTAAASSSSSTTTNNLHGLNFYQNNSKPNFYLPNNSSIISSTSPTHPTITLDLTSNPSSSSSNSSTHFGKFTPNFPNSRYPFTSQLDFGSSRNNVLSWNNGLLSYNRNNHPTTTTTTNNIYQNYIQQRHPATSLPHQQPPLPDTIAAATKVITADPSFQSALAAALTSIISTGGTSAGPTKSSSTRGEQSLFQLMAATTTTNKGNGCGTSFLNNITTPTTTTSNSPPTGNMVFVPTSSLPFSNSKSASASPGDHIDLTN 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2652442 2656836 - Lsi02G003070.1 Lsi02g00307 655049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00307 522 MobiDBLite consensus disorder prediction 50 67 - -
Lsi02g00307 522 MobiDBLite consensus disorder prediction 134 149 - -
Lsi02g00307 522 Pfam WRKY DNA -binding domain 180 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 Coils Coil 6 40 - -
Lsi02g00307 522 Gene3D WRKY domain 172 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 SUPERFAMILY WRKY DNA-binding domain 177 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 MobiDBLite consensus disorder prediction 48 67 - -
Lsi02g00307 522 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 4 517 - -
Lsi02g00307 522 MobiDBLite consensus disorder prediction 134 180 - -
Lsi02g00307 522 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 4 517 IPR044810 GO:0003700
Lsi02g00307 522 MobiDBLite consensus disorder prediction 1 22 - -
Lsi02g00307 522 SMART WRKY_cls 179 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 ProSiteProfiles WRKY domain profile. 174 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00307 Lsi06g01483 CCT
Lsi02g00307 Lsi06g01483 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00447 Lsi-Chr1:3726678 Lsi02g00307 Lsi-Chr2:2652442 8.31E-45 dispersed
Lsi02g00307 Lsi-Chr2:2652442 Lsi11g01439 Lsi-Chr11:22919194 3.38E-51 dispersed
Lsi05g00196 Lsi-Chr5:2743592 Lsi02g00307 Lsi-Chr2:2652442 6.25E-41 transposed
Lsi02g00307 Lsi-Chr2:2652442 Lsi06g01483 Lsi-Chr6:25303697 1.48E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24751 PF03106 WRKY 4.70E-24 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00307 - - csv:101218344 787.719