Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00573 ATGGAAGAACAACTCACAACAACTCCCATTCCAAAAGAAAAATGGGGCAATAACTCTCTCAATGGAACTTTCACAGCTGATGAAGAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAGCTTCCCCTGACCCTTTCATGGCTTCCCTTCCCTATCAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCACAAGAGAACACTAATGAAAGTTATTGCAGCCAATTATTATTCCCCACAAATGAAAATAATGATAATAATTATTATTATTCTTGCAATGCCTTGAATAATAATAATTATAATAATTTTTCATTGGGGGAGCTTGGAGATTATTGCAATAACAATAATGGTGGTAATTATTTCCACCTTGAAGATCATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTTCTGAAGAAGCTGCCCATAATCAACTTGAGATCAATTGCAAGAAAAGATCAAGAGGAGGATTTGGGGATCATGTACAAAAGCTGGGGAGGAATGAGAGGCCAAAGAAAAATCAAAAGCTTATTACCTCAAGCAGCAACACTGATAAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAATGCCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGGGAACGAGTCCGAATGGTCCGACCAAATCACGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATTAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTCCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATTCGACGACCCCGAAAACATCAAAAGAGAAAGAATTATGA 1002 39.92 MEEQLTTTPIPKEKWGNNSLNGTFTADEEEEEATFMAQLLFNTTASPDPFMASLPYQTPSSSTFYSLSQENTNESYCSQLLFPTNENNDNNYYYSCNALNNNNYNNFSLGELGDYCNNNNGGNYFHLEDHEDSMNLEVSENNFQPCSEEAAHNQLEINCKKRSRGGFGDHVQKLGRNERPKKNQKLITSSSNTDKDGNAGPSRQSTSNYCSEDESNASLDRNGGANNSGTSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNSTTPKTSKEKEL 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7014859 7016907 + Lsi03G005730.1 Lsi03g00573 658323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00573 333 MobiDBLite consensus disorder prediction 1 20 - -
Lsi03g00573 333 Gene3D - 243 301 IPR036638 GO:0046983
Lsi03g00573 333 MobiDBLite consensus disorder prediction 162 183 - -
Lsi03g00573 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 293 IPR011598 GO:0046983
Lsi03g00573 333 MobiDBLite consensus disorder prediction 162 257 - -
Lsi03g00573 333 CDD bHLH_AtIND_like 245 307 - -
Lsi03g00573 333 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 42 321 - -
Lsi03g00573 333 SMART finulus 250 299 IPR011598 GO:0046983
Lsi03g00573 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 310 IPR036638 GO:0046983
Lsi03g00573 333 MobiDBLite consensus disorder prediction 184 248 - -
Lsi03g00573 333 Pfam Helix-loop-helix DNA-binding domain 254 294 IPR011598 GO:0046983
Lsi03g00573 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 321 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00573 Lsi03g01026 CCT
Lsi03g01026 Lsi03g00573 ECH
Lsi03g00573 Lsi03g01026 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00573 Lsi-Chr3:7014859 Lsi06g01169 Lsi-Chr6:21956891 1.03E-21 dispersed
Lsi03g00573 Lsi-Chr3:7014859 Lsi03g01026 Lsi-Chr3:19818463 1.24E-34 wgd
Lsi03g00573 Lsi-Chr3:7014859 Lsi04g01492 Lsi-Chr4:22609862 4.40E-51 wgd
Lsi03g00573 Lsi-Chr3:7014859 Lsi08g01523 Lsi-Chr8:23282865 2.69E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24977 PF00010 HLH 1.30E-08 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00573 - - cmo:103495305 423.705