Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01026 ATGAATAAAATTATGGAACCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCATATACTGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGCTTCCAATGAAGAACCACCATCATTGACCATGGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAATAATAATCATCCTTACACCTTCACTGATTCTCAACCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCGAGAATGCCGATTGCTTGGACGACGACAACGGTTTGAATATTCGTAAAACAAGGCAATGCAGGCTGCAACACTCCCCTGCTGACCCTGCTGACACACTTGTTGTTGTCAATGGGAAGAGTTCACAACCGAAAAGACGAGCTGAGGACGTGACAGTGGAAGAAACTATGAGGGAAGATAAAGTTGCACCGATGTCGTCGGTCGATAACAACTCGAGGAAACGATCCCAAAATTTGCTTGATGTCGAAAAGACGAAAAGGAATGTGAGGGCACGGAAGAGCTCGAAGATTGCTTCGGCTAGCTGCAATGAAGAGGAGCACATTGTTAGTCCAAATGGGCAATGCACAAGTAGTTTCAGCTCTGAGGATGACTGTAATGAGCCTCAAGAAATCAATGGTGGAATCACTTCTAGCTCAACCTCAAAAGGGTCTGCAACCCTGACCTCAAATGGAAGGCCAAGAGCCAAAAAGAAGAGAAAGAATCAACGAAAGGTTGAGAATCTTACAAGGCCTCGTCCCGAACGGCACGAAGGTAAGACCGATTCCACACGATCATATATCGAAACGATCCACGGTGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAATTTTTGCAGCTTCAAATCAAGTTATTGAGCTCTGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAATAG 1122 42.51 MNKIMEPIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWASNEEPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTFTDSQPLWLPNNGASLSLDFSMEDVENADCLDDDNGLNIRKTRQCRLQHSPADPADTLVVVNGKSSQPKRRAEDVTVEETMREDKVAPMSSVDNNSRKRSQNLLDVEKTKRNVRARKSSKIASASCNEEEHIVSPNGQCTSSFSSEDDCNEPQEINGGITSSSTSKGSATLTSNGRPRAKKKRKNQRKVENLTRPRPERHEGKTDSTRSYIETIHGVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19818463 19820417 - Lsi03G010260.1 Lsi03g01026 658776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01026 373 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 370 - -
Lsi03g01026 373 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 8 370 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 291 308 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 168 187 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 164 308 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 230 276 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00573 Lsi03g01026 CCT
Lsi03g01026 Lsi03g00573 ECH
Lsi03g00573 Lsi03g01026 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01026 Lsi-Chr3:19818463 Lsi04g01492 Lsi-Chr4:22609862 5.24E-25 dispersed
Lsi03g00573 Lsi-Chr3:7014859 Lsi03g01026 Lsi-Chr3:19818463 1.24E-34 wgd
Lsi03g01026 Lsi-Chr3:19818463 Lsi08g01523 Lsi-Chr8:23282865 2.07E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01026 - - mcha:111017743 467.618