Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01143 ATGGCCGGAATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTCGACTTTGTTCGCGATGTTGTTCAAATGTCGGCGGGGACGAACACTGGAGAGATTTTCAAGAGGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAATTTCGACCTGTTGATGCATCTTCGTCTTCTTCTTCATCTTGTGGTGCCGTTACTGTGAGAGATTCGTCTCAGTTTCCATGGCTTTCTGATTTAGTGGCCGCATTGAAAGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGTTCTTCTTCTGAAGAAATTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCTTATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTCACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTGTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCACGAGATTACTGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGATGGTGTTGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTGATGGACAGGATGACTCTGCCAGAAAGAGTGGAGACCAGACGTATGAGAGGTCTTATGTACAGAGATGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAGCTCCAAAATCTGACTCTCACACCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATCACAATATCGAGCAACCTACGGGATTAACGAATGGGAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCAATGGAGGAGCGCAGAGCATCTGTGACCGAACTTCGATCTCTATCTAAAAGAAGCACGGACAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCATTGGTCAATCTATTAACTTCTGATGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGGTTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAGAATGCAGCAGCAACACTTTTTAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCATTCCTGCTCTTGTGGATTTACTTGAAAACGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTTCAGCTCTATTAAAGATGCTTACGGACTCGGTTAACTCCATGATCGACGAAGCTCTCACAATAATGTCAGTCCTGGCCAGCCACCAAGAAGCGAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACTGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGAGAGATACCGACAACCTTTCTTGTATAAGTAGGCTCGGCGCCGTGATTCCTCTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCGAAAAGGAAGGCGACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1875 44.0 MAGIVAGDSDSAPALALLDFVRDVVQMSAGTNTGEIFKRDCTDLVRRIVLLTHLFEEIRDFNGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLSDLVAALKDTKRLIFIASTFRSCGSSSEEIAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNDGVDQLIFKGLEKLPSSSEACSDGQDDSARKSGDQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSMEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIISALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15795236 15798822 - Lsi04G011430.1 Lsi04g01143 661192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01143 624 Coils Coil 604 624 - -
Lsi04g01143 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Lsi04g01143 624 SMART arm_5 497 537 IPR000225 GO:0005515
Lsi04g01143 624 SMART arm_5 415 455 IPR000225 GO:0005515
Lsi04g01143 624 SMART arm_5 538 578 IPR000225 GO:0005515
Lsi04g01143 624 SMART arm_5 374 414 IPR000225 GO:0005515
Lsi04g01143 624 SMART arm_5 456 496 IPR000225 GO:0005515
Lsi04g01143 624 SMART arm_5 580 620 IPR000225 GO:0005515
Lsi04g01143 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 318 IPR013083 -
Lsi04g01143 624 SMART Ubox_2 264 311 IPR003613 GO:0004842|GO:0016567
Lsi04g01143 624 PANTHER U BOX DOMAIN-CONTAINING 267 621 - -
Lsi04g01143 624 Pfam Armadillo/beta-catenin-like repeat 375 413 IPR000225 GO:0005515
Lsi04g01143 624 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Lsi04g01143 624 SUPERFAMILY ARM repeat 335 618 IPR016024 -
Lsi04g01143 624 PANTHER U BOX DOMAIN-CONTAINING 20 229 - -
Lsi04g01143 624 Gene3D - 525 623 IPR011989 -
Lsi04g01143 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 509 IPR000225 GO:0005515
Lsi04g01143 624 ProSiteProfiles U-box domain profile. 268 318 IPR003613 GO:0004842|GO:0016567
Lsi04g01143 624 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 267 621 - -
Lsi04g01143 624 Pfam U-box domain 265 316 IPR003613 GO:0004842|GO:0016567
Lsi04g01143 624 Gene3D - 420 524 IPR011989 -
Lsi04g01143 624 Gene3D - 324 419 IPR011989 -
Lsi04g01143 624 Coils Coil 153 173 - -
Lsi04g01143 624 SUPERFAMILY RING/U-box 267 318 - -
Lsi04g01143 624 MobiDBLite consensus disorder prediction 249 268 - -
Lsi04g01143 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Lsi04g01143 624 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 20 229 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01143 Lsi09g00646 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01363 Lsi-Chr2:18368167 Lsi04g01143 Lsi-Chr4:15795236 1.58E-10 dispersed
Lsi04g01143 Lsi-Chr4:15795236 Lsi09g00646 Lsi-Chr9:7207350 1.50E-144 dispersed
Lsi06g01520 Lsi-Chr6:25618577 Lsi04g01143 Lsi-Chr4:15795236 1.73E-34 dispersed
Lsi04g01143 Lsi-Chr4:15795236 Lsi10g01368 Lsi-Chr10:17834008 3.56E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01143 - - csv:101221534 1101.27