Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01143 | ATGGCCGGAATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTCGACTTTGTTCGCGATGTTGTTCAAATGTCGGCGGGGACGAACACTGGAGAGATTTTCAAGAGGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAATTTCGACCTGTTGATGCATCTTCGTCTTCTTCTTCATCTTGTGGTGCCGTTACTGTGAGAGATTCGTCTCAGTTTCCATGGCTTTCTGATTTAGTGGCCGCATTGAAAGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGTTCTTCTTCTGAAGAAATTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCTTATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTCACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTGTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCACGAGATTACTGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGATGGTGTTGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTGATGGACAGGATGACTCTGCCAGAAAGAGTGGAGACCAGACGTATGAGAGGTCTTATGTACAGAGATGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAGCTCCAAAATCTGACTCTCACACCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATCACAATATCGAGCAACCTACGGGATTAACGAATGGGAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCAATGGAGGAGCGCAGAGCATCTGTGACCGAACTTCGATCTCTATCTAAAAGAAGCACGGACAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCATTGGTCAATCTATTAACTTCTGATGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGGTTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAGAATGCAGCAGCAACACTTTTTAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCATTCCTGCTCTTGTGGATTTACTTGAAAACGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTTCAGCTCTATTAAAGATGCTTACGGACTCGGTTAACTCCATGATCGACGAAGCTCTCACAATAATGTCAGTCCTGGCCAGCCACCAAGAAGCGAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACTGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGAGAGATACCGACAACCTTTCTTGTATAAGTAGGCTCGGCGCCGTGATTCCTCTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCGAAAAGGAAGGCGACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG | 1875 | 44.0 | MAGIVAGDSDSAPALALLDFVRDVVQMSAGTNTGEIFKRDCTDLVRRIVLLTHLFEEIRDFNGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLSDLVAALKDTKRLIFIASTFRSCGSSSEEIAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNDGVDQLIFKGLEKLPSSSEACSDGQDDSARKSGDQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSMEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIISALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL | 624 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15795236 | 15798822 | - | Lsi04G011430.1 | Lsi04g01143 | 661192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01143 | 624 | Coils | Coil | 604 | 624 | - | - | |
Lsi04g01143 | 624 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 426 | 468 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | SMART | arm_5 | 497 | 537 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | SMART | arm_5 | 415 | 455 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | SMART | arm_5 | 538 | 578 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | SMART | arm_5 | 374 | 414 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | SMART | arm_5 | 456 | 496 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | SMART | arm_5 | 580 | 620 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 318 | IPR013083 | - | |
Lsi04g01143 | 624 | SMART | Ubox_2 | 264 | 311 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi04g01143 | 624 | PANTHER | U BOX DOMAIN-CONTAINING | 267 | 621 | - | - | |
Lsi04g01143 | 624 | Pfam | Armadillo/beta-catenin-like repeat | 375 | 413 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | Pfam | Armadillo/beta-catenin-like repeat | 457 | 495 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | SUPERFAMILY | ARM repeat | 335 | 618 | IPR016024 | - | |
Lsi04g01143 | 624 | PANTHER | U BOX DOMAIN-CONTAINING | 20 | 229 | - | - | |
Lsi04g01143 | 624 | Gene3D | - | 525 | 623 | IPR011989 | - | |
Lsi04g01143 | 624 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 467 | 509 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | ProSiteProfiles | U-box domain profile. | 268 | 318 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi04g01143 | 624 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 11 | 267 | 621 | - | - | |
Lsi04g01143 | 624 | Pfam | U-box domain | 265 | 316 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi04g01143 | 624 | Gene3D | - | 420 | 524 | IPR011989 | - | |
Lsi04g01143 | 624 | Gene3D | - | 324 | 419 | IPR011989 | - | |
Lsi04g01143 | 624 | Coils | Coil | 153 | 173 | - | - | |
Lsi04g01143 | 624 | SUPERFAMILY | RING/U-box | 267 | 318 | - | - | |
Lsi04g01143 | 624 | MobiDBLite | consensus disorder prediction | 249 | 268 | - | - | |
Lsi04g01143 | 624 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 385 | 427 | IPR000225 | GO:0005515 | |
Lsi04g01143 | 624 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 11 | 20 | 229 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01143 | Lsi09g00646 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01363 | Lsi-Chr2:18368167 | Lsi04g01143 | Lsi-Chr4:15795236 | 1.58E-10 | dispersed | |
Lsi04g01143 | Lsi-Chr4:15795236 | Lsi09g00646 | Lsi-Chr9:7207350 | 1.50E-144 | dispersed | |
Lsi06g01520 | Lsi-Chr6:25618577 | Lsi04g01143 | Lsi-Chr4:15795236 | 1.73E-34 | dispersed | |
Lsi04g01143 | Lsi-Chr4:15795236 | Lsi10g01368 | Lsi-Chr10:17834008 | 3.56E-133 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01143 | - | - | csv:101221534 | 1101.27 |