Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01456 ATGGTTATGGAAGTTACTTCTAAGTCTCAGCAACGTTCTCACTACCATCACCAAAGCCAGGCAACTTCGACAGTAGCTGTCTCTAGCACCATGTCAAATGGCTTCTTAGCTTCTCACCACTACAATGGAGATTTTCTTTCTCCCTTGTCTGTAATGCCACTCAAGTTAGATGGGTCGTCCCTTTGTATCATGGAATCAATGAGCACATCATCACAACCTCAAGAAATATTGCCAAATATCTCACCAAAACTGGAGGACTTTCTTGGTGGTGCAACTCATGGAGAAGAGGCCACAGCTCTAAGCTTAGACAGCATATACTACAATCAGAATGCTGATGCTGATTCAGAGAGACAACATTCTTTGAGTCTTTTTAAGCAACAAGAGCAACAACATATTCTTTTTCATTCTCAGCGATATTATTCTGGAATGTTCCAGTATGCTACTGAGGATCCTAACAAGGATTCTCATATTGCAACCTATTGTTCTGAAATTCGACAAGATATGGAGCAGCGGATCAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGACTTGCAGCCACTTAGCTTGTCCATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTGCTCCAAACCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCCCTGGCCAGTCGAAAGCAGCCGGTCCATCGGAAATCGATCGACACGTTCGGACAAAGGACTTCACAGTACAGAGGCATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGAAGACAAGGTTAGCCATATTTTAGACAATGTTTTTGCCTCTTCATCAAATCTATGTTCTAACTTCAAACCATTTCCTTGTTGTTTGTCATGTTCAACTTCCTCATGGATGCTGTTTAATTCAATTGGGTGGACATCAGTTTATCTCGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACATTTAAACTTCCAGTTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAACATGAACCGTCAAGAATATGTTGCACACCTAAGAAGGTGCTCGAAAGAAAAGCAGTGGATTCTCCAGAGGAGCTTCCATATACAGAGGAGTAACCAGGTGTGTGTTTATAAGATTCAATCAATGCTCTACACTACTTTTCTTTCTGCTAAATACTGTTTCATTTGGTTTACTAGAGATCAATCTTTTGAATGTTTTTTCAGACATCATCAGCATGGAAGATGGCAAGCTCGGATCGGAAGAGTCGCGGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTCCGCGGTGCAAACGCCGTTACGAACTTCGTCACATCGAGGTACGATGTAGAAAGGATCATAGCAAGCGGTAGCCTCCTTTCAGGAGAGTTTGTGATACGAAACAAAGAACACAAACCAACCAACACCATCGAACGTAAAGAACCAAAACAGAACATCGCTAAAACCGACGACCCCTCAGAGATATCAAACAACTTAGATTGGAGGATGGTATTCAACGACAGCCTGCTGCTGGATCCAAGCGCAACAGTCGAATCCATAGACGAAAAGTCCATGACCTCAAGCGGTTACAAGAATCATGTGATCGGAGTCGTTGAAACCGAAAGTTGTAATCAGGTAATGGTGAATGATTCAAGCAAGTACAAGGCTCAATTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTGTGCAGCTCAAGGAAAACAAGTCCTGATAAGTCAAATGCCTCATCCTCAGTGTTATTTGCAAGAGGCTCATTTGGAAGCAATGGAAGTAATTGGCTTCCATCACCCCAAATTTCTTTTCCTGTTTGGAATGACGCCTGA 1953 43.01 MVMEVTSKSQQRSHYHHQSQATSTVAVSSTMSNGFLASHHYNGDFLSPLSVMPLKLDGSSLCIMESMSTSSQPQEILPNISPKLEDFLGGATHGEEATALSLDSIYYNQNADADSERQHSLSLFKQQEQQHILFHSQRYYSGMFQYATEDPNKDSHIATYCSEIRQDMEQRINGCCFGGMNCQDLQPLSLSMSPGSQSSCVTAPNQISQPGPATMETKKRALASRKQPVHRKSIDTFGQRTSQYRGIDGLVDMRLICGTIVVRRKVKPGKEDKVSHILDNVFASSSNLCSNFKPFPCCLSCSTSSWMLFNSIGWTSVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFQLKNYQLQIEEMKNMNRQEYVAHLRRCSKEKQWILQRSFHIQRSNQVCVYKIQSMLYTTFLSAKYCFIWFTRDQSFECFFRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGANAVTNFVTSRYDVERIIASGSLLSGEFVIRNKEHKPTNTIERKEPKQNIAKTDDPSEISNNLDWRMVFNDSLLLDPSATVESIDEKSMTSSGYKNHVIGVVETESCNQVMVNDSSKYKAQFSNASSVVSSLCSSRKTSPDKSNASSSVLFARGSFGSNGSNWLPSPQISFPVWNDA 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22324688 22327683 - Lsi04G014560.1 Lsi04g01456 661505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01456 650 Gene3D AP2/ERF domain 428 482 IPR036955 GO:0003700|GO:0006355
Lsi04g01456 650 Gene3D AP2/ERF domain 270 351 IPR036955 GO:0003700|GO:0006355
Lsi04g01456 650 CDD AP2 317 349 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 ProSiteProfiles AP2/ERF domain profile. 423 481 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 SUPERFAMILY DNA-binding domain 429 482 IPR016177 GO:0003677
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 247 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 316 376 - -
Lsi04g01456 650 SUPERFAMILY DNA-binding domain 312 350 IPR016177 GO:0003677
Lsi04g01456 650 Pfam AP2 domain 429 473 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 316 376 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 428 619 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 35 247 - -
Lsi04g01456 650 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 428 619 - -
Lsi04g01456 650 CDD AP2 428 480 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 ProSiteProfiles AP2/ERF domain profile. 243 349 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 MobiDBLite consensus disorder prediction 1 22 - -
Lsi04g01456 650 SMART rav1_2 305 355 IPR001471 GO:0003700|GO:0006355
Lsi04g01456 650 SMART rav1_2 423 487 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01456 Lsi08g01547 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01456 Lsi-Chr4:22324688 Lsi06g01180 Lsi-Chr6:22096693 3.91E-60 dispersed
Lsi01g00869 Lsi-Chr1:7000981 Lsi04g01456 Lsi-Chr4:22324688 3.59E-30 wgd
Lsi04g01456 Lsi-Chr4:22324688 Lsi08g01547 Lsi-Chr8:23533820 3.72E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25201 PF00847 AP2 1.10E-07 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01456 K09285 - csv:101212143 807.364