Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01520 | ATGAGAAACTATAGAATGGCGAAACGACATTGTTACCCATTATCAATTGCACATTCGATTTCAGGTCACCAAAACGCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGATTGGAGATGACCATTCCCAACCAAAGCTCGAACCTTTCTCAATTAACGTTAACATCAATTCCCCAAATTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGATGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAATCTCCACAACACTCTCCCACACAATCCCTCTCTAGCTGCAGCTCGCTCCAAGGCGGTTGACTGGATTCTCAAGGTCAATTCCCATTACTCTTTCACTGCTCTCACCGCCGTTTTGGCTGTTGATTACGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCGGCCAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTCTTCGAAGCTAAAACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAATCCACTTTCCTTTTTGGACTATATTGTAAGACGCCTCAGCCTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCAGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCAACTCGCCGCAAAATACCACGATCAGCTTCTGGGTTTTCTTCAAATCGACAAGGATAAGATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAGAAACGAATGGAAGAATAAACCAAGATTTGGTTTGGTCGACATGTCGTGCAGCTCAAATGGTCGGACTAGGAATGTCGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCTCCGTAG | 1056 | 43.84 | MRNYRMAKRHCYPLSIAHSISGHQNASLLLDSLYCFEEEIGDDHSQPKLEPFSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNNLHNTLPHNPSLAAARSKAVDWILKVNSHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLSLKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPQLAAKYHDQLLGFLQIDKDKMEDCSRFILEASSRGHRNEWKNKPRFGLVDMSCSSNGRTRNVDIVVSSPETATKKRKIDEQPP | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 22842315 | 22845183 | - | Lsi04G015200.1 | Lsi04g01520 | 661569 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01520 | 351 | Gene3D | - | 205 | 293 | - | - | |
| Lsi04g01520 | 351 | SUPERFAMILY | Cyclin-like | 73 | 204 | IPR036915 | - | |
| Lsi04g01520 | 351 | CDD | CYCLIN | 104 | 196 | IPR013763 | - | |
| Lsi04g01520 | 351 | ProSitePatterns | Cyclins signature. | 104 | 135 | IPR006671 | - | |
| Lsi04g01520 | 351 | SMART | Cyclin_C_2 | 206 | 323 | IPR004367 | - | |
| Lsi04g01520 | 351 | SMART | cyclin_7 | 109 | 197 | IPR013763 | - | |
| Lsi04g01520 | 351 | Pfam | Cyclin, N-terminal domain | 91 | 204 | IPR006671 | - | |
| Lsi04g01520 | 351 | Gene3D | - | 101 | 204 | - | - | |
| Lsi04g01520 | 351 | PANTHER | CYCLIN D3.1 PROTEIN | 54 | 341 | - | - | |
| Lsi04g01520 | 351 | Pfam | Cyclin, C-terminal domain | 206 | 302 | IPR004367 | - | |
| Lsi04g01520 | 351 | PANTHER | CYCLINS | 54 | 341 | IPR039361 | - | |
| Lsi04g01520 | 351 | SUPERFAMILY | Cyclin-like | 207 | 299 | IPR036915 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi04g01520 | Lsi08g01495 | CCT | |
| Lsi04g01520 | Lsi08g01495 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01520 | Lsi-Chr4:22842315 | Lsi05g00231 | Lsi-Chr5:3074203 | 2.93E-85 | dispersed | |
| Lsi01g00952 | Lsi-Chr1:7729034 | Lsi04g01520 | Lsi-Chr4:22842315 | 2.10E-79 | wgd | |
| Lsi03g00524 | Lsi-Chr3:6105614 | Lsi04g01520 | Lsi-Chr4:22842315 | 1.19E-75 | wgd | |
| Lsi04g01520 | Lsi-Chr4:22842315 | Lsi08g01495 | Lsi-Chr8:23110265 | 1.82E-103 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01520 | K14505 | - | csv:101218302 | 579.326 |