Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01558 ATGGCGGAGGCTGCATTCTCCGTAGGATCGCGCTTCAGGACGCGTGATTCTAGTCCTGAGTCCGTCGTTTTCACTCTCGAGTCGAATTATAGCGTTTTCTCTTCTACTTCTGTTAGTGTCGAACGCTGCTCTTTCGCTTCTGATGCTCACGATTATGACTGTCGAAACTCTGACATCTCCCTGCATCTGGAAGGGAACATTGAGGAATGCAAAGAAGAAAACAGTTGTCCAGATTCTGATCCGAAGGCAATCAATCCCTCTGTGGGAAGGGAGCACAATTGCCTACCTGGAAAGAGAGAAAAAGTGAAAGTTGAAAAGGAAAATAGCTATATTGATGCAATGGATGGATGTCAACCATTGGATATGGCTAGAAACTCCTTTTCTCTCGCTCTCAAAGAATGTCGGGATCGAAGAACTAGATCCGAAGCTTTATTGAATAAGGTAGACAGGCAAAGAGCTGCTTCATTGGACCTGAATAGTGTCACTGTCTCATCTCCTCGTCTGGCAATCATGAGAAAGAGCTCTTTCTCTCCTATAACATCTGATACTAGTATGCTACAAAGTCCTGCTATGACGAGTTGTAGGCCTGCCAATGCTGAAATCCAAAAAGGTTGGAGCTCAGAAAGAGTTCCGTTACATAAAAATTATAGCTCGAAGCAAGCGACTACTGCATTCTTGCCTTTCAGTAATGGGAGAACATTGCCATCAAAGTGGGAAGATGCAGAGCGGTGGATCTTCAGTCCTGTTTTCAAAGATGGCATGGTCAGATCTGCTGTCCCTCCACCTCAAAGGCGGCCCAAGTCGAAAAGTGGCCCACTTGGATTTCCTGGTATAGCATACAATTCATCGTATTCACCAGGAATGCTGATGCTTGAGAGATCAAAGGAGGCGATTTTCGTGTCTTCACCCTTTTCGGCAGGAATGGTTGCAGCAGATGGGTTGGCAGTTCATTCAAGTGGTCATGAAGCAGTCAACCCTGTACAAAATCAGCCTTGCATAGCACGCTCAGTTAGTGTGCATGGTTGTTCTCAAACGAGGAGTGAGTCTTCATTAACTTCATCAGTTGTTGGTACAAGTTTGATTTTTTTTGGACAATATCTTCGTTATGTCATGATTGAATTGATTATTAGATTGATTGAAATATGTTTAAAAAGTCCGTCCTATTGTCCTGGAGCATCTCAAAACTCTAACGAAGTCAACAAATCAGTCACCAATATATCTCGTGATGTTTCAAGAAGGGACATGGCGACCCAAATGAGCCCAGATGATGACTTTAAATCATCTTTGGAGATTAGACCACCTATCTCTATTGCCACTTCTTCAGTCCAACCCACTAGGAAGCTAAAGAGCTTGTCTTGCTCAAAATCGGAAGTCAAGGATGTTGAGGTTGATGGACGCGTTACCTTGACTAGGTGGTCTAAGAAACACAAATCCCGGATTCCATGCAAGGTTCAAGTTCGTGATAAGGGTGCAGAGCCTGTGATCTGTGCTTGGGATGTATCAGACACAACAAGGAGCATCTCAAAAGTCATGAGAGAGGAGGCAAAGATTACAGCATGGGAGAATCTTCAGAAGGCAAAAGCTGAGGCTGCTATTAGGAAGTTAGAGATGAAGCTGGAGAAGAAGAGATCATCATCCATGGATAAGATCGTAAAAAAGTTGAAATCTGCTCAGAAGAAAGCTCAAGAAATGAGGAACTTCGTGCTAGCTAATCAGATGAGCCAAGTTGACGGGTCTTCTCAAAGAGTAGTATCTTCTGGCAGAAGCCCTCAGAGGACTTCATTAAGCAGTTGTTTCACTTGCCACGCTTTCTGA 1815 43.91 MAEAAFSVGSRFRTRDSSPESVVFTLESNYSVFSSTSVSVERCSFASDAHDYDCRNSDISLHLEGNIEECKEENSCPDSDPKAINPSVGREHNCLPGKREKVKVEKENSYIDAMDGCQPLDMARNSFSLALKECRDRRTRSEALLNKVDRQRAASLDLNSVTVSSPRLAIMRKSSFSPITSDTSMLQSPAMTSCRPANAEIQKGWSSERVPLHKNYSSKQATTAFLPFSNGRTLPSKWEDAERWIFSPVFKDGMVRSAVPPPQRRPKSKSGPLGFPGIAYNSSYSPGMLMLERSKEAIFVSSPFSAGMVAADGLAVHSSGHEAVNPVQNQPCIARSVSVHGCSQTRSESSLTSSVVGTSLIFFGQYLRYVMIELIIRLIEICLKSPSYCPGASQNSNEVNKSVTNISRDVSRRDMATQMSPDDDFKSSLEIRPPISIATSSVQPTRKLKSLSCSKSEVKDVEVDGRVTLTRWSKKHKSRIPCKVQVRDKGAEPVICAWDVSDTTRSISKVMREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIVKKLKSAQKKAQEMRNFVLANQMSQVDGSSQRVVSSGRSPQRTSLSSCFTCHAF 604
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 23131941 23136188 - Lsi04G015580.1 Lsi04g01558 661607
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01558 604 PANTHER REMORIN FAMILY PROTEIN 81 602 - -
Lsi04g01558 604 PANTHER OS02G0116800 PROTEIN 81 602 - -
Lsi04g01558 604 Coils Coil 525 545 - -
Lsi04g01558 604 Pfam Remorin, C-terminal region 492 581 IPR005516 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi04g01558 Lsi08g01479 CCT
Lsi04g01558 Lsi08g01479 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01558 Lsi-Chr4:23131941 Lsi05g00003 Lsi-Chr5:47691 3.60E-06 dispersed
Lsi01g00117 Lsi-Chr1:1233076 Lsi04g01558 Lsi-Chr4:23131941 4.71E-09 transposed
Lsi07g00644 Lsi-Chr7:6867727 Lsi04g01558 Lsi-Chr4:23131941 6.94E-13 transposed
Lsi08g01607 Lsi-Chr8:24027719 Lsi04g01558 Lsi-Chr4:23131941 1.11E-08 transposed
Lsi11g00027 Lsi-Chr11:290992 Lsi04g01558 Lsi-Chr4:23131941 1.28E-12 transposed
Lsi01g00975 Lsi-Chr1:7971455 Lsi04g01558 Lsi-Chr4:23131941 8.30E-67 wgd
Lsi04g01558 Lsi-Chr4:23131941 Lsi08g01479 Lsi-Chr8:22939102 2.89E-164 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01558 - - csv:101215278 945.266