Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02065 ATGGCGTTCTCTAGATCTCTCTCACTTTCTCTCTGCATTTTCTTCCCCTGTTTTCTCTCCCTCTCTCAAGCTTATACGTTCTACGTCGGTGGAAAAGATGGGTGGGTTCTCAACCCTTCTGAGACCTACGATAATTGGGCTCATCGAAACAGGTTTCGAGTCAATGACGTTCTGGTGTTCAAGTATGCAAGAGGGTCGGATTCTGTGCTGGTGGTGAGTAAAGAGGATTATGAGAAGTGTGATTTGAAGAATCCGATTGTTAAATTGGAAGATGGGAATTCGGAGTTTAAATTTGATCGTTCTGGAGCTTTCTATTTTGTTAGTGGGAAGCAGGGGAGCTGTGAAAAGGGCCAGAAATTGGTGGTCGTTGTTATGGCTCTGCGCTCTCTGCCTCCGCCCTCCACGGTGGGCTCTCCGCCACCTTCTGGAGTTAAGCCGCCACAGGTTTCTCCATCTCCGCCGTCTACTTCGCCGTATCCCGGAGGAAAATCGCCTTCGGGAACACCCACTTCACCTTCTCCACCTGGGGCTAAATCTCCGGTGACAGCTCCGGTGCCATCAGGTTCTCATTCTCCTGGCGCAAAATCTCCTTCTGGTTCTCCGCCGTCATCAGGGATACCTATTTTGCCAACTCCGCCGTCGGGAACACCCAGTTCACCATCTCCTTCTGAATCTCATGCTCCAGTGCCATCAGGTTCTCATTCTCCTGGTTCGCCGTATCCGGGAGCTAAATCTCCTTCTAGTTCTCCGCCGTCAGGGACACCTAGTTCGCCGTCGCCGTCGTCAGGAACCCCTATTTTGCCATCTCCGCCGTCGGGAACACCCAGTTCACCATCTCCTTCTGGGTCTCATGCTCCGGCGCCGTCAGGTTCTCATTCCCCTGGTTCGCCTTATCCTGGAGCTAAATCTCCTTCTAGTTCTCCGCCGTCGGGGGCACCTAATTCGCCGTCGCCGTCGTCAGGAACCCCTATTTTTCCATCTCCGCCGTCAGGAACACCAAGTTCACCGTCTCCTTCTGAGTCTCATTCTCCTGGTTCGCCGTATCCCGGAGCTAAATCTCCTTCTGGTTTTTCGCCGTCGGGAACACCAACCTCACCATCTCCGTCATCTGGAACACCCACTTCTCCGTCTCCGTCTGGGTCTGAAACTCCAGTTACCACACCAGTGCCGGCTGGTTCCCCGTCTTCGCCATATCCGGGAGCTAAATCTCCGACGCCGGGAACACCCACTTCGCCGTCTCCATCTGGTTCTGAAACTCCGGTGACCACTCCAGTGCCGGTTGGTTCCCCATCTTCGCCATATCCCGGAGCTAAATCTCCGTCGTCAGGAACACCCACTTCGCCGTCTCCATCTGGGTCTGAAACTCCAGTGACCACACCAACGCCGATCGGTTCTCCCACATCACCTTACCCTGGAGCAAGCTCTCCGTCAGGGTCACACATTTCGCCGTCTCCTTTTGGTTCTGAAACTCCGACGACGACACCAGTCCCAGCCGGTTCTCCGACTTCCCCATTACCTGGAGCAATCTCTCCATCGGGATCACCCTTTTCACCACCCCCCGGCGGCGCTGCCTCTCCGGGAACATCCCCCGCGGGTTCACCATCTTCAGGATCAAATTCTCCGACCACATCGCCATCTCCAGCCAGCGCCATAACTCCGATAACAGCTCCGGTGCCGGCATTTTCACCGAGTTCATTCTCTCCGATTATCTCTCCAGTGTTATCGCCGTCGATCGAACCGCCAGTCGGGTCGCCAGTACCATCGCTACTCCCACCGGAGGCTGGTGGTGTTCCAGTAAGTTCTCCGCCATCTCCACCATTACCTCCATCGTCTTCCTCCGGACCAGCACCATCACCAACCAGCACTGCAAATGATAGAACAACATCAGGACCACGATCGTCTGCCATAGCTTCAACTCCGTCGGTAATTTTGTTCAGTTCCATTATCGTTGTGTTAAGCATGGTCATCAATGACGGAATGATTAAGAACTTCACTTAA 1998 54.15 MAFSRSLSLSLCIFFPCFLSLSQAYTFYVGGKDGWVLNPSETYDNWAHRNRFRVNDVLVFKYARGSDSVLVVSKEDYEKCDLKNPIVKLEDGNSEFKFDRSGAFYFVSGKQGSCEKGQKLVVVVMALRSLPPPSTVGSPPPSGVKPPQVSPSPPSTSPYPGGKSPSGTPTSPSPPGAKSPVTAPVPSGSHSPGAKSPSGSPPSSGIPILPTPPSGTPSSPSPSESHAPVPSGSHSPGSPYPGAKSPSSSPPSGTPSSPSPSSGTPILPSPPSGTPSSPSPSGSHAPAPSGSHSPGSPYPGAKSPSSSPPSGAPNSPSPSSGTPIFPSPPSGTPSSPSPSESHSPGSPYPGAKSPSGFSPSGTPTSPSPSSGTPTSPSPSGSETPVTTPVPAGSPSSPYPGAKSPTPGTPTSPSPSGSETPVTTPVPVGSPSSPYPGAKSPSSGTPTSPSPSGSETPVTTPTPIGSPTSPYPGASSPSGSHISPSPFGSETPTTTPVPAGSPTSPLPGAISPSGSPFSPPPGGAASPGTSPAGSPSSGSNSPTTSPSPASAITPITAPVPAFSPSSFSPIISPVLSPSIEPPVGSPVPSLLPPEAGGVPVSSPPSPPLPPSSSSGPAPSPTSTANDRTTSGPRSSAIASTPSVILFSSIIVVLSMVINDGMIKNFT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27778890 27781458 + Lsi04G020650.1 Lsi04g02065 662114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02065 665 MobiDBLite consensus disorder prediction 184 202 - -
Lsi04g02065 665 CDD OsENODL1_like 25 125 IPR041846 -
Lsi04g02065 665 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 511 525 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 470 496 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 132 557 - -
Lsi04g02065 665 Gene3D - 23 129 IPR008972 -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 528 551 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 570 636 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 616 636 - -
Lsi04g02065 665 PANTHER EARLY NODULIN-LIKE PROTEIN 2 1 337 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 390 413 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 278 300 - -
Lsi04g02065 665 PANTHER BLUE COPPER PROTEIN 1 337 IPR039391 GO:0009055
Lsi04g02065 665 MobiDBLite consensus disorder prediction 133 181 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 230 255 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 129 141 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 186 202 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 154 175 - -
Lsi04g02065 665 PRINTS Proline rich extensin signature 209 226 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 344 389 - -
Lsi04g02065 665 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055
Lsi04g02065 665 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055
Lsi04g02065 665 MobiDBLite consensus disorder prediction 243 277 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 220 242 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 203 219 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 301 343 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 434 461 - -
Lsi04g02065 665 MobiDBLite consensus disorder prediction 574 615 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02065 Lsi08g01251 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01232 Lsi-Chr4:19152350 Lsi04g02065 Lsi-Chr4:27778890 2.74E-23 dispersed
Lsi04g02065 Lsi-Chr4:27778890 Lsi05g00619 Lsi-Chr5:7619886 1.12E-20 dispersed
Lsi10g00159 Lsi-Chr10:2565306 Lsi04g02065 Lsi-Chr4:27778890 2.20E-25 dispersed
Lsi02g00157 Lsi-Chr2:1310933 Lsi04g02065 Lsi-Chr4:27778890 7.36E-26 transposed
Lsi02g01618 Lsi-Chr2:22047984 Lsi04g02065 Lsi-Chr4:27778890 1.20E-26 transposed
Lsi02g01821 Lsi-Chr2:24017037 Lsi04g02065 Lsi-Chr4:27778890 4.02E-22 transposed
Lsi02g03006 Lsi-Chr2:36137097 Lsi04g02065 Lsi-Chr4:27778890 1.48E-24 transposed
Lsi03g01554 Lsi-Chr3:26505841 Lsi04g02065 Lsi-Chr4:27778890 2.67E-08 transposed
Lsi07g01117 Lsi-Chr7:16596660 Lsi04g02065 Lsi-Chr4:27778890 1.20E-21 transposed
Lsi10g01609 Lsi-Chr10:20579312 Lsi04g02065 Lsi-Chr4:27778890 2.34E-43 transposed
Lsi04g02065 Lsi-Chr4:27778890 Lsi08g01251 Lsi-Chr8:20976998 4.69E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02065 - - csv:101218690 231.491