Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01558 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCAGTGGCAGTCGGCGTCAATCGCAAAGACTCCACTAACATCGGTGGCGGCGGTGGCGGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCGTCAAGGCTCTCTGTCAGCCCACTGATTACCAAGAAACCTGCGAGAAAGCTCTGTCCCAGGCCGGAACCAACACGAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGCCGCCGTAGACGAAATTAAATCGGCCCTCGGAAATTCCGCCACCTTGAAAGAATCCGCCACTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTGACAGAATCACAGACAATTTCGACATCCAAAAAATCGATGATTACGTTGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCATAGACGGCTTCGAAAATGTCACCGGCGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAAATGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCAATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGACGGCTGTTGACGGAGGAATCCGATGAACAAGAGGAAGAACCATCGTGGGTTAGTGACAGACGTGGGCTACTCCAAGCCACCGGCGCCAGCATCAAGGCGGATGTTGTGGTGGCGAAAGACGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATATCCCAAAGAAAAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTGATGATAGATAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAAATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCTACCGTTTCGGTGATCGGAACCAACTTCATCGCGAAGGACCTGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAGGCAGTGGCGCTTCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCCCACCGTCAATTCTACCGAGATTGTACCATTACCGGCACCATCGATTTCATATTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATACTTGTGAGGAAGCCAATGGCGAATCAACAATGCATCGTCACAGCTCAGGGCCGAACTCAACGGAAGGAGCCCACCGCCATAATCTTGCAGAATTGCGTCATTTCTTCTGACCCTGGCTTCTTCCCCGTCCGCCACATCCACAAAGCCTACCTCGGCCGTCCATGGAAACAATATTCAAGAACCATCATCATGCAGTCCCAAATCGATGATTTAATTCAACCTGAAGGGTGGCTCCCATGGATGGGCGATTTCGCTCTCAATACTCTGTTTTACACAGAGTACAATAACAGGGGACCTGGCGCCGCCAAGGATAAACGGATTAAGTGGAGGGGAATTAAGGAGATCACACCGAAGCACGCCATTGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCGTGGATCAAGCCCACCGGTGTCCCGTACACTTCCGGCATGATGGCAGTATAA 1719 49.39 MSDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKDSTNIGGGGGGGATAEISTSTKAVKALCQPTDYQETCEKALSQAGTNTSDPRELIKAGFHAAVDEIKSALGNSATLKESATDPMAKQALDACGELMDYAIDDLLISFDRITDNFDIQKIDDYVEDLKVWLSGALTYQETCIDGFENVTGDTGEKMKNLLKMSKEMTANGLGMVSEVTSIMTSFGLPSAGRRLLTEESDEQEEEPSWVSDRRGLLQATGASIKADVVVAKDGSGKYKTVSEALNDIPKKSNKTFVIYVKAGVYQEQVMIDKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVSVIGTNFIAKDLGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMANQQCIVTAQGRTQRKEPTAIILQNCVISSDPGFFPVRHIHKAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRIKWRGIKEITPKHAIDFTAGRFIRGDPWIKPTGVPYTSGMMAV 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23346044 23348212 - Lsi05G015580.1 Lsi05g01558 664050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01558 572 Pfam Plant invertase/pectin methylesterase inhibitor 58 202 IPR006501 GO:0004857
Lsi05g01558 572 PANTHER PECTINESTERASE 12 570 - -
Lsi05g01558 572 Pfam Pectinesterase 259 555 IPR000070 GO:0030599|GO:0042545
Lsi05g01558 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Lsi05g01558 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Lsi05g01558 572 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Lsi05g01558 572 CDD PMEI-like_3 61 213 - -
Lsi05g01558 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 206 IPR006501 GO:0004857
Lsi05g01558 572 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Lsi05g01558 572 SMART PMEI_2 54 207 IPR006501 GO:0004857
Lsi05g01558 572 PANTHER PECTINESTERASE 12 570 - -
Lsi05g01558 572 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Lsi05g01558 572 Gene3D - 253 569 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01558 Lsi09g01450 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01558 Lsi-Chr5:23346044 Lsi11g00122 Lsi-Chr11:1390273 1.98E-170 dispersed
Lsi02g02500 Lsi-Chr2:31480217 Lsi05g01558 Lsi-Chr5:23346044 5.23E-10 transposed
Lsi05g01558 Lsi-Chr5:23346044 Lsi06g00089 Lsi-Chr6:897490 1.80E-116 wgd
Lsi05g01558 Lsi-Chr5:23346044 Lsi09g01450 Lsi-Chr9:22477690 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01558 K01051 - csv:101212686 992.26