Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01317 ATGATATCTCTGACTGCTATACGACTGCCACGTGTCTTCCGTCAGGCGATGTGGGTAGTTGTTGAAGAACCGCTCCAAACCCTTTTCAAACCCATTCTTATTTGCTTCTTTACATTCATCTTCTCGATCTCAGCTTCTGAAACATTCAAGGACTGTGCGCCTAGAAATTGTGGACATGGCCCTGTTATAAAATACCCCTTTTGGATAGATGGTGAGCAAGATTCTTCCTGTGGATACCCAGATTTCAAAATCAAATGCTTTAGAGGTTTCCCAGTTCTTGAAATCTCCGATGAAGTTTTAGTCGTCAAAGACATTTTTTACCAAAGCAATTCGTTTTTGTTGGTCAGTGCTACAGCTTACAACGATGAACATTCATGCCCATCTCCCTCACATGACATTAGCCTAGATGGAAAACCATTCCATTATACTTCAGATAATGAAGATTTCTTCTTCTTCTATGGTTGCCCATTAGTTCACAAGGATTATATCTATGAACTTAACTGTACTACCAACAAAACCCAGTTTTCTTTTGCGACTTTCCACAAGGATTTTCTGGAGTTGGAGGAATTTCCTTTACAGTCATGTCGTTCTTCGATTCGTGTTCCTATTCGTAAGAACTCGACTGCTAATTTAGCTGATTTTAGGGACATGAGTTACGTTAAGATTTGGAAGAGGGGTTTTGTTCTGAATTGGACTGCACAAGACTGCAGCAAATGCGAGCAAAGTGGTGGCTATTGTAGATTGGAAAACAATAAGTTTGTTTGTTCTTGTAGCGATGGAACTCATTCCAATAGCTGCAAACAGGAAAAAAGCAAGACCAGAACAAAGATTATCATTGGGATATGCACTGGTTTTGGAGCCTTGCTTTTAACCTTTCTTGTTCTTGGCATCTGCTACCGATGGCGCCAACTTCGTCAAAGAAGGTCTCACATGTTGCCGTATGTGCAACGAAGCATTCCATCGAATCCGTCGAATCCCCCAAATCCTTCTTCTGTGGAAGAAGTTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCGACAAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCGTACTCAAAGATGGGCGTGCCGTTGCTGTCAAACGGTTGTTTGAAAGCAATTTTAAGAGAGTTGAGCAGTTCATGAATGAGGTGGAGATCCTTGCTCGTTTGCGCCACCGCAACCTTGTTTCGCTTTACGGTTGCACCTCACGCAGTAGCCGTGAGCTTCTGCTTGTGTACGAATATGTCCCAAATGGCACAGTGGCTGATCACCTCCATGGAAAACTAGCAAAGCCTGGGAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTCGACAACAACTACTGCGTTAAAGTAGCTGATTTCGGATTGTCCCGTCTCTTCCCGCTCGATGTCACACACGTTTCAACCGCTCCACAAGGCACTCCTGGCTATGTTGATCCAGAGTACCATCAGTGCTACCAACTCTCTGACAAAAGCGATGTCTTCAGCTTTGGTGTGGTACTTGTTGAACTCATGTCCTCAATGCCTGCTGTTGACATCACAAGGCATAGACAAGAGATCAACCTATTCAACATGGCCATCAATAAGATCCAAAGCCGCACGTTACACGAACTCGTCGACCCGTCGCTCGGTTTCGAATCAGACTACAAAATCCAAGACATGATAACCAGCGTAGCCGAGTTGGCATTTCGATGCCTGCAGAGCATGAAAGACGAAAGACCAACAATGATGGAAGTTCTCGACACTCTTAACATCATACAGAAGCAGAACGCCGAGAAGGCGACAGATCGAGAGGCCGACATTTCAGACGATGCTGTGTTGCTAAAGAATGGCTATGGATCTTCTCCAAGTTCCATATCTGTATCTTGGGTTAGCAGTAACACCTCAACAGCAACTAATGAAACCATCAGCTCT 2058 43.97 MISLTAIRLPRVFRQAMWVVVEEPLQTLFKPILICFFTFIFSISASETFKDCAPRNCGHGPVIKYPFWIDGEQDSSCGYPDFKIKCFRGFPVLEISDEVLVVKDIFYQSNSFLLVSATAYNDEHSCPSPSHDISLDGKPFHYTSDNEDFFFFYGCPLVHKDYIYELNCTTNKTQFSFATFHKDFLELEEFPLQSCRSSIRVPIRKNSTANLADFRDMSYVKIWKRGFVLNWTAQDCSKCEQSGGYCRLENNKFVCSCSDGTHSNSCKQEKSKTRTKIIIGICTGFGALLLTFLVLGICYRWRQLRQRRSHMLPYVQRSIPSNPSNPPNPSSVEEVENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGVLKDGRAVAVKRLFESNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRSSRELLLVYEYVPNGTVADHLHGKLAKPGKLPWSTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELMSSMPAVDITRHRQEINLFNMAINKIQSRTLHELVDPSLGFESDYKIQDMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNAEKATDREADISDDAVLLKNGYGSSPSSISVSWVSSNTSTATNETISS 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23754335 23759505 + Lsi06G013170.1 Lsi06g01317 666047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01317 686 ProSiteProfiles Protein kinase domain profile. 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01317 686 SMART serkin_6 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01317 686 Pfam Wall-associated receptor kinase galacturonan-binding 52 115 IPR025287 GO:0030247
Lsi06g01317 686 Pfam Protein kinase domain 360 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01317 686 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Lsi06g01317 686 Gene3D Phosphorylase Kinase; domain 1 332 435 - -
Lsi06g01317 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 33 674 IPR044652 -
Lsi06g01317 686 Pfam Wall-associated receptor kinase C-terminal 172 260 IPR032872 -
Lsi06g01317 686 MobiDBLite consensus disorder prediction 660 686 - -
Lsi06g01317 686 CDD STKc_IRAK 365 634 - -
Lsi06g01317 686 SUPERFAMILY Protein kinase-like (PK-like) 344 641 IPR011009 -
Lsi06g01317 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Lsi06g01317 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 33 674 - -
Lsi06g01317 686 Gene3D Transferase(Phosphotransferase) domain 1 436 658 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00194 Lsi06g01317 CCT
Lsi02g00194 Lsi06g01317 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00203 Lsi-Chr2:1696135 Lsi06g01317 Lsi-Chr6:23754335 2.56E-44 dispersed
Lsi02g00205 Lsi-Chr2:1712814 Lsi06g01317 Lsi-Chr6:23754335 0 dispersed
Lsi06g01317 Lsi-Chr6:23754335 Lsi07g00689 Lsi-Chr7:7422634 8.64E-153 dispersed
Lsi04g00487 Lsi-Chr4:4513122 Lsi06g01317 Lsi-Chr6:23754335 8.68E-90 transposed
Lsi02g00194 Lsi-Chr2:1670999 Lsi06g01317 Lsi-Chr6:23754335 4.58E-131 wgd
Lsi04g00234 Lsi-Chr4:2377209 Lsi06g01317 Lsi-Chr6:23754335 3.36E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83743 PF00069 Pkinase 4.40E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01317 - - cmo:103494139 1173.3