Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01672 ATGAATAATTCCCAAATGCTGGCCTGTGATCTTGACTCCCTTGTGCTCTCAAAAATGAATAATGCAGCATGTAGTTGGGAATTAGAAGAAACCCCAGAAACCCCTCACTATCACTATCACTATCACCACCTTCTTCCACCTCAAATCCAATCTCTTTATACTAATAATATTACTACCACTGACTCCCCAAACCCAAACGCAAACGCTTCCTCAAATTACCAAACTCCTCATCACATATCTATGCATTCTTCCGAGGACCCAAGTGGAAGTGGGAGCGACCGCAAGAGGAGATGCCACAAGCGCGCAAAAGCAGGAGGAGGATCGGGCTGCAACAAGCTCAAAACTCATCCCTCTGCTGATCATGGCGGCTACATCCATGTCAGAGCAAGGAGGGGACAGGCCACCGACAGTCACAGCCTTGCAGAGAGGGTCAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTTTGCAAACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTAATGCTCGACGAAATTATTAACTATGTTCAGTCCCTGCAAAATCAAATTGAGTTCCTGTCCATGAAGCTTGCTTCTGTTAACCCCATCCTCTACGACGTTGGCATGGATAATCCAGAAATATTATTGAATGGGAATGGCATGGTGTCACACTCAGAGCAGGCAGAATTGGCCTATAATATGGCACCATACAACACATTTCAGGCCACAGGCGGCGGCGGTGGCAGGCCGATCTTAACGCCCGGAAACATGAGCTTTATCAATCCATCTCCACTTTTCTTGGACCATGGGAATACTTCTCTGCTACATCTGTCATGA 828 47.22 MNNSQMLACDLDSLVLSKMNNAACSWELEETPETPHYHYHYHHLLPPQIQSLYTNNITTTDSPNPNANASSNYQTPHHISMHSSEDPSGSGSDRKRRCHKRAKAGGGSGCNKLKTHPSADHGGYIHVRARRGQATDSHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQNQIEFLSMKLASVNPILYDVGMDNPEILLNGNGMVSHSEQAELAYNMAPYNTFQATGGGGGRPILTPGNMSFINPSPLFLDHGNTSLLHLS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26959007 26961121 - Lsi06G016720.1 Lsi06g01672 666402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01672 275 Pfam Helix-loop-helix DNA-binding domain 137 184 IPR011598 GO:0046983
Lsi06g01672 275 Gene3D - 130 201 IPR036638 GO:0046983
Lsi06g01672 275 MobiDBLite consensus disorder prediction 55 121 - -
Lsi06g01672 275 PANTHER BHLH-TRANSCRIPTION FACTOR 72 231 - -
Lsi06g01672 275 SMART finulus 139 189 IPR011598 GO:0046983
Lsi06g01672 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 183 IPR011598 GO:0046983
Lsi06g01672 275 MobiDBLite consensus disorder prediction 55 87 - -
Lsi06g01672 275 CDD bHLH_AtBPE_like 123 203 - -
Lsi06g01672 275 Coils Coil 173 193 - -
Lsi06g01672 275 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 231 IPR024097 GO:0006355
Lsi06g01672 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 199 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00525 Lsi06g01672 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01672 Lsi-Chr6:26959007 Lsi09g00778 Lsi-Chr9:8827021 2.22E-39 dispersed
Lsi05g00376 Lsi-Chr5:4738511 Lsi06g01672 Lsi-Chr6:26959007 8.67E-34 transposed
Lsi02g00525 Lsi-Chr2:4541496 Lsi06g01672 Lsi-Chr6:26959007 6.60E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25564 PF00010 HLH 8.00E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01672 - K18878 csv:101208544 323.168