Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01100 ATGGCTTCCATTTCTCCTTCTCTTCTTTCTATCTTGCTTTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCGACTTTCACCATTTTAAATCAGTGTGATTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGCCATCACCATGCCGCCGGCGTGGTCAGGCCGTATTTGGGGCCGCACTTATTGCTCTCAAGATGCCGCCGGCAGATTCTCCTGTGCCACTGCCGACTGCGGCTCTGGCACGGTCGAATGTAATGGTGCCGGTGCTACACCGCCCGCCACCCTTGCCGAGTTCACTCTCAATGGTGCAGGCGGGCTCGATTTCTATGATGTTAGCCTCGTCGATGGCTATAATGTGCCTATGTTAATTACCCCACAAGATGGAACAGGTGGGGGCAATTGCACGACGATTGGATGTGCGACGGATTTAAATAGCGAATGTCCAACAGAATTAAGAGTGGTAGCGAGCAACGCAGGTGGGCGAAGCGTAGCGTGTAAGAGTGCATGTGGAGCATTTGGTGAGGCCCAATATTGCTGTAGTGGCGATTATGGGAATCCAACCACTTGTCGACCTACGTCCTACTCAGAGTTCTTTAAGTCGGCATGTCCGCAAGCTTATAGTTATGCCTATGATGACGGAACTAGCACATTCACTTGCAATGGTGCCAATTACCTCATCACTTTCTGTCCTTTTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTACCCACGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTAACGTCAGTAGCCGTTATCACCACCGTGACGGCAGCTCTATGTCGGCGATTTTTGCGTCTCTTTTAA 897 51.39 MASISPSLLSILLFFPFFSGVNSATFTILNQCDYTVWPGVLSGAGTSQLSTTGFVLQTGQSNAITMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGTVECNGAGATPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPTELRVVASNAGGRSVACKSACGAFGEAQYCCSGDYGNPTTCRPTSYSEFFKSACPQAYSYAYDDGTSTFTCNGANYLITFCPFLSTSVKSSNGQYPRAVDISRAEHSGRPLTSVAVITTVTAALCRRFLRLF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16405759 16410026 - Lsi07G011000.1 Lsi07g01100 667522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01100 298 CDD TLP-PA 25 247 - -
Lsi07g01100 298 Gene3D Thaumatin 24 248 IPR037176 -
Lsi07g01100 298 SMART tha2 26 248 IPR001938 -
Lsi07g01100 298 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Lsi07g01100 298 PANTHER OS09G0536300 PROTEIN 2 261 - -
Lsi07g01100 298 PIRSF PR5 1 291 IPR001938 -
Lsi07g01100 298 Pfam Thaumatin family 30 248 IPR001938 -
Lsi07g01100 298 SUPERFAMILY Osmotin, thaumatin-like protein 24 248 IPR037176 -
Lsi07g01100 298 PANTHER OS03G0233200 PROTEIN 2 261 IPR001938 -
Lsi07g01100 298 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Lsi07g01100 298 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lsi07g01100 298 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Lsi07g01100 298 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Lsi07g01100 298 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00595 Lsi07g01100 CCT
Lsi01g00595 Lsi07g01100 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00595 Lsi-Chr1:4750179 Lsi07g01100 Lsi-Chr7:16405759 6.67E-115 dispersed
Lsi03g01981 Lsi-Chr3:31190190 Lsi07g01100 Lsi-Chr7:16405759 8.07E-42 dispersed
Lsi07g01100 Lsi-Chr7:16405759 Lsi08g01312 Lsi-Chr8:21484746 1.04E-106 dispersed
Lsi09g00294 Lsi-Chr9:3040586 Lsi07g01100 Lsi-Chr7:16405759 5.94E-55 dispersed
Lsi10g00478 Lsi-Chr10:6914624 Lsi07g01100 Lsi-Chr7:16405759 6.34E-87 dispersed
Lsi07g01099 Lsi-Chr7:16390594 Lsi07g01100 Lsi-Chr7:16405759 2.36E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01100 - - csv:101216818 528.865