Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00545 ATGGCGGATATGGATTTCGTTGAGGGCGTTGGAGAGAGTTCTTCGCCGCCTCGAAGCTTTGGTGGCTTCTGTGCTGTCCACGATGTTCGGAACGATGTTTATACTCGGTTAGTTGAGTGTGGACATGAAGAGGCCGTTTCTAATCCCCAATTTCGCGAGAACTTGGATGCTCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATGTTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAAGCTTCTTTTCCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGTTTTCTGGAGCACATAAGTACTAAGTCAGATGGCAATGATGATCACGTTTTTCTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATGGAAAACTTCCACTATCACACAAGAGAACTCGAGGAAATATAATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTTAGAAAAAACTCAAAGGCCGTGGATAGGAGGGTGGGTAATATTGCACATGTTCTGATACACGAAGTGATATTTTCAACGATTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGGGAAGCACATGTGTTTTCAACATCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGAAACTGATGGCTTGTACGAAGCTATGGAAAAAGCAGTGGCTAGATATGAGGGATCGTGGTCTGGTTCTTCACATTCTCATCCGGCAGTCAAGAAAACATTAGATGCCCAGGAAAAATCAGCAGATTGGGAAATAGACAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCTGGATCTTGTGGTGATTTGTACCGTGGATTTTATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCTGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCATAAAAATGTAGTTCGTTTTATAGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTGAAGCTCTCTCAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGGATACTTACATTTAAATAACATTATCCATAGAGACTTGAAGACGGCAAATCTGCTGATGGACACTCAGCATGTGGCAGATTTTGGAGTTGCACGATACCAGAGTCAAGGAGTAATGACAGCAGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATGTTTTCAGTTTTGCTATTGTGCTGTGGGAACTAGTAACAGCAAAGGGACTACGTCCAGATCTTCCCAAAAACGTTCACCCCAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGAACCTGTAAATCGGCCTCCATTTACCGAGATAAAAGTTGAACTCGAAAATCTCCTCGAAGAAGTTGAGGTATACTCTTCCCCGTCTTTACAACCTTATGGATAA 1554 41.57 MADMDFVEGVGESSSPPRSFGGFCAVHDVRNDVYTRLVECGHEEAVSNPQFRENLDAHFNRLPPSYGLDVNMEKVEDVLLHQKLLFLAKDPEKCPVYHIRFLEHISTKSDGNDDHVFLDSILLSGSSNEAADGKLPLSHKRTRGNIIDFEPCSKLEDLNLDVRKNSKAVDRRVGNIAHVLIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVEETDGLYEAMEKAVARYEGSWSGSSHSHPAVKKTLDAQEKSADWEIDRRLLKIGERIASGSCGDLYRGFYLGQDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMGYLHLNNIIHRDLKTANLLMDTQHVADFGVARYQSQGVMTAETGTYRWMAPEVINHLPYDQKADVFSFAIVLWELVTAKGLRPDLPKNVHPKLLDLMQRCWDAEPVNRPPFTEIKVELENLLEEVEVYSSPSLQPYG 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13577550 13590978 - Lsi08G005450.1 Lsi08g00545 668471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00545 517 SMART serkin_6 284 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00545 517 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 509 - -
Lsi08g00545 517 Gene3D Transferase(Phosphotransferase) domain 1 351 512 - -
Lsi08g00545 517 PRINTS Tyrosine kinase catalytic domain signature 382 400 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 PRINTS Tyrosine kinase catalytic domain signature 443 465 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 PRINTS Tyrosine kinase catalytic domain signature 345 358 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 SUPERFAMILY ACT-like 182 252 IPR045865 -
Lsi08g00545 517 Pfam Protein tyrosine and serine/threonine kinase 284 497 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 ProSiteProfiles ACT domain profile. 183 257 IPR002912 -
Lsi08g00545 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Lsi08g00545 517 CDD STKc_MAP3K-like 290 494 - -
Lsi08g00545 517 Gene3D Phosphorylase Kinase; domain 1 270 350 - -
Lsi08g00545 517 ProSiteProfiles Protein kinase domain profile. 284 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00545 517 SUPERFAMILY Protein kinase-like (PK-like) 276 510 IPR011009 -
Lsi08g00545 517 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 509 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01782 Lsi08g00545 CCT
Lsi04g01782 Lsi08g00545 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01782 Lsi-Chr4:25024973 Lsi08g00545 Lsi-Chr8:13577550 1.58E-97 dispersed
Lsi08g00545 Lsi-Chr8:13577550 Lsi11g01225 Lsi-Chr11:20841418 2.81E-79 dispersed
Lsi08g00545 Lsi-Chr8:13577550 Lsi07g01075 Lsi-Chr7:16102866 3.88E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83832 PF07714 PK_Tyr_Ser-Thr 3.90E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00545 - - csv:101216231 919.457