Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01495 ATGGTACCACCGTATGCGCTTGATTCTCTTTATTGTTCAGAAGACCACTGGGAGAACGACGACGAAGAAGAAGAAAGGGGTTTTCATGAGCAACCTTATTCTAATTTAACAACCGAATCAAGTTCTCCGATTCTGGCAGTGGCAGAGCAGGATCTGTTTTGGGAAAACGATGAATTAATTTCTCTGTTCTCAAGAGAGAAGCCTAATGAACTGTTTAAAACCATTCAGATTGACCCTTCTCTTGCTGCCGCCCGACGAAGCGCCGTCGAGTGGATGCTGAAGGTTAATGCCCATTATTCTTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTATTTGGATCGGTTTCTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGTCTCAGCTTGCTGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTAGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTATTTGAAGCCAAGACAATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCTCAAGGAGGCTTGGATTCAAGGAACATATCTGCTGGGAAATTCTTTGGCAGTGTGAGCGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTTATGTCCTTTCTTCCTTCTGTAATGGCCACCGCTACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCAACCTCAGCGTTGAATACGATTCCCAGCTTCTTAACATCCTCGGAATCGACAAGGGGAATGTGGAAGAATGCTGTAAGCTGATCTCAAATGCATCAAGAAGAAACGGCAACCAATTCAAGAAACGTAAAATTGGGTCGATTCCGGGTAGCCCGAACGGCGTGATGGACGTGTCATTCAGCTCCGATAGCTCGAACGACTCGTGGTCAGTGGCCTCGTCAGTTTCATCTTCGCCAGAGCCATTAACGAAGAAGAACAGAGCCAATGGATCAATGTCTGGAGATTGCGAAACATTCAGAACCCTCTCTTAA 1059 44.76 MVPPYALDSLYCSEDHWENDDEEEERGFHEQPYSNLTTESSSPILAVAEQDLFWENDELISLFSREKPNELFKTIQIDPSLAAARRSAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKEHICWEILWQCERTILSVILESDFMSFLPSVMATATMLHVFKAMEEPNLSVEYDSQLLNILGIDKGNVEECCKLISNASRRNGNQFKKRKIGSIPGSPNGVMDVSFSSDSSNDSWSVASSVSSSPEPLTKKNRANGSMSGDCETFRTLS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23110265 23112386 + Lsi08G014950.1 Lsi08g01495 669421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01495 352 Gene3D - 70 185 - -
Lsi08g01495 352 Pfam Cyclin, N-terminal domain 80 185 IPR006671 -
Lsi08g01495 352 CDD CYCLIN 85 177 IPR013763 -
Lsi08g01495 352 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Lsi08g01495 352 PANTHER CYCLINS 33 336 IPR039361 -
Lsi08g01495 352 PANTHER CYCLIN D3.1 PROTEIN 33 336 - -
Lsi08g01495 352 SMART Cyclin_C_2 187 313 IPR004367 -
Lsi08g01495 352 Pfam Cyclin, C-terminal domain 187 312 IPR004367 -
Lsi08g01495 352 SUPERFAMILY Cyclin-like 169 282 IPR036915 -
Lsi08g01495 352 MobiDBLite consensus disorder prediction 305 352 - -
Lsi08g01495 352 Gene3D - 186 276 - -
Lsi08g01495 352 SUPERFAMILY Cyclin-like 56 185 IPR036915 -
Lsi08g01495 352 SMART cyclin_7 90 178 IPR013763 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01520 Lsi08g01495 CCT
Lsi04g01520 Lsi08g01495 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00802 Lsi-Chr1:6327312 Lsi08g01495 Lsi-Chr8:23110265 5.00E-50 dispersed
Lsi05g00231 Lsi-Chr5:3074203 Lsi08g01495 Lsi-Chr8:23110265 4.12E-97 dispersed
Lsi08g01007 Lsi-Chr8:18603898 Lsi08g01495 Lsi-Chr8:23110265 1.51E-52 dispersed
Lsi01g00952 Lsi-Chr1:7729034 Lsi08g01495 Lsi-Chr8:23110265 3.52E-82 wgd
Lsi03g00524 Lsi-Chr3:6105614 Lsi08g01495 Lsi-Chr8:23110265 9.86E-84 wgd
Lsi04g01520 Lsi-Chr4:22842315 Lsi08g01495 Lsi-Chr8:23110265 1.82E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01495 K14505 - csv:101205442 582.022