Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01547 ATGAAGTCGATGAATGAGAATGAGAATAGTAGTAATAATAATAATAATAACAATAATAATAGTTGGTTGGGGTTCTCTCTTTCTCCTCACATGAAAATGGAGGTTACTTCTTCTGATCATCATTACAATCAACACCATTCTCACCCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACAACAACAATACTGAAATCTTTTATGGAATTCCTGATAAATCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTGCCGAGTTCTTCACCGAAGCTAGAGGATTTTCTTGGTGCTGCAACAATGGGGGGTCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAGAGAACATTCCTTGGACCTTCTACACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCCAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCCTCTAATGACGACGAAATCCCTTGCCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCCACACATAATACTCTGGAGCAGCATATTACCGCCGGCGGTGGTGGCGGCGCTCTTGTGAATGACGGTAGTGGTGGTGGTGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGCCCAGGTTCACAATCGAGCTCGTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGCGACGGAACCGCCGTGGAAACTAAAAAAAGAGGCCCCGGAAAACTCTGCCAGAAACAGCCGGTTCACCGGAAATCCATTGATACTTTTGGCCAAAGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACTGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGACAAACCAGAAAAGGAAGACAAGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTTGCTGCCCTCAAATACTGGGGACCCTCTACCCATATAAACTTTCCAATGAGCTTCATATCTCCCAGTCCATCTATACATAGATGGACTGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGACAAACCAGAAAAGGAAGACAAGGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATTGCAGCAATCAAATTCCGCGGTGTAAATGCAGTCACCAACTTTGACATTTCCAGATACGATGTCGAGAGAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCGAGCAGCGATACGACCGTCGTTCCCTACGATTCCTCGGTTGCGGCAAACAACAATGTCGGGATCGGGATTGGAATCGAAATCAATCCTGACAACAACGGCGGGAATGATAATGATTGGAAGATGGCATTGTATCAGAATCCATCACATCATCAACAACAACAACAACAACAGGCTTGTGTTGCAGAATCGTTGGATCATCATCACAATAAGTCCATGACCGTGTCGGGAGGTTATCGAAACGCTTCGTTTTCGATGGCATTGCAGGACTTAATCGGGATTGAATCGTTGAATGCTAGTACTCATGGGATTGAAGATGATGTGAGCAAACAACAAGTGACTCATTTTTCAAATTCATCGTCATTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCCGACAAGACGAATAATGTGTCAATGCTGTTTGGAAAGCCTCCACCCTTGATGGCGTCAAAGCTAATCGGTGCAACGAGCGGGGTTGGGGTTGGTGCTTGGTACCCATCCCCACAGCAGTTGAGGCCAACAGCAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA 1983 45.59 MKSMNENENSSNNNNNNNNNSWLGFSLSPHMKMEVTSSDHHYNQHHSHPASNPFYLSPHFNNNNTEIFYGIPDKSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGAATMGGRGGYFNQNAESETDREHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPSNDDEIPCLRNWVSRSHYSATHNTLEQHITAGGGGGALVNDGSGGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGTAVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPMSFISPSPSIHRWTGRYEAHLWDNSCKKEGQTRKGRQGTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDVEPSSDTTVVPYDSSVAANNNVGIGIGIEINPDNNGGNDNDWKMALYQNPSHHQQQQQQQACVAESLDHHHNKSMTVSGGYRNASFSMALQDLIGIESLNASTHGIEDDVSKQQVTHFSNSSSLVTSLSSSREGSPDKTNNVSMLFGKPPPLMASKLIGATSGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23533820 23546496 + Lsi08G015470.1 Lsi08g01547 669473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01547 660 Pfam AP2 domain 311 366 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 MobiDBLite consensus disorder prediction 1 25 - -
Lsi08g01547 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 375 - -
Lsi08g01547 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 413 630 - -
Lsi08g01547 660 MobiDBLite consensus disorder prediction 252 277 - -
Lsi08g01547 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 385 411 - -
Lsi08g01547 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 18 375 - -
Lsi08g01547 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 413 630 - -
Lsi08g01547 660 SMART rav1_2 385 444 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 SMART rav1_2 311 380 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 SUPERFAMILY DNA-binding domain 384 440 IPR016177 GO:0003677
Lsi08g01547 660 PRINTS Ethylene responsive element binding protein signature 420 440 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 PRINTS Ethylene responsive element binding protein signature 312 323 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 CDD AP2 310 376 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 CDD AP2 385 440 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 MobiDBLite consensus disorder prediction 252 298 - -
Lsi08g01547 660 ProSiteProfiles AP2/ERF domain profile. 363 438 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 385 411 - -
Lsi08g01547 660 ProSiteProfiles AP2/ERF domain profile. 311 374 IPR001471 GO:0003700|GO:0006355
Lsi08g01547 660 SUPERFAMILY DNA-binding domain 310 376 IPR016177 GO:0003677
Lsi08g01547 660 Gene3D AP2/ERF domain 383 440 IPR036955 GO:0003700|GO:0006355
Lsi08g01547 660 Gene3D AP2/ERF domain 310 376 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01456 Lsi08g01547 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01547 Lsi-Chr8:23533820 Lsi10g01048 Lsi-Chr10:14712752 9.93E-61 dispersed
Lsi08g01547 Lsi-Chr8:23533820 Lsi08g01548 Lsi-Chr8:23543233 1.04E-15 tandem
Lsi03g01463 Lsi-Chr3:25509701 Lsi08g01547 Lsi-Chr8:23533820 3.49E-19 transposed
Lsi07g00615 Lsi-Chr7:6626254 Lsi08g01547 Lsi-Chr8:23533820 4.17E-20 transposed
Lsi08g00734 Lsi-Chr8:15688279 Lsi08g01547 Lsi-Chr8:23533820 3.17E-09 transposed
Lsi01g00869 Lsi-Chr1:7000981 Lsi08g01547 Lsi-Chr8:23533820 5.73E-30 wgd
Lsi04g01456 Lsi-Chr4:22324688 Lsi08g01547 Lsi-Chr8:23533820 3.72E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25835 PF00847 AP2 4.50E-10 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01547 K09285 - csv:101212797 970.304