Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00646 ATGAGCAGCGAAGTCGTCGGAGACGGCCGGCGGCGTGCCTTAGCGCTGCAACTTCTTGACCTGGTACGTGACTTTGTTCTGATGTCAGGGAGGTCCATTGCTGGCGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATCGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTCTGCAGCGGCAGTGGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTGTTCGTCTTCTTGGTTGGATTGTCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTTTACGCGGCTTTGACTTTCTCTGTATACGACGAGGAGGGTTGTGCGACTTCGACGGTTGATTTGGTTAGAGCTCAATTGAGGAGAGCATCAAACAAGTATGAATCTATGTCTAACCCTGCAGAAAAGAAGCTTCAAGCTAGATCAAGTTCTGTAAAATGGATGATCAATAATGATGTCAAGAGCATGTCTAGTGTTGATGACGATGGAGATGTAGAGTCTCAGCATCGTCCTCGGAACCGCGATCATTTGATTAGTCTCGATTCGGTGAATTCTTGCTTTGATGAGTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCTAGCAAGAGCCAAGATGAAGTTAGGAAGCCTGTTGAAGTTGAAATCCCTGAAAACTTCTTATGCCCCATTTCCTTTGAGTTGATAGGAAATAGAACATGTCCAAAAACTCAGGAGCAGCTCCAATCTCTGATCCTCACTCCAAATTTTTTAATGAGAAAACTGATCTCTGAATGGTGTGAAGAGCACAATGTGAAGCTAGAGGAAGGACTAACCACCAGGAAACTTAAGAAGTATAGATCATTCGAAGACGACTGCCGAAAGACTTTGCCGATAAAAACTCTGGTTCGACACCTTTCATTTGGGTCGATTCAGGAGCAGAAGATAGCCGTGACTGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCAAAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTTACCTTTTAACTTCAGAAGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCTGTTTCTTACATTTCCCAACTTCTCAAAGTTGGGAGCATGGAAGGGAGAGAATGTGCTGCTGCCACGATTTACAGCTTGTCACTAGCCGATGAGAACAAGGCAATAATCGGGGCTTCGGGTGTGATACCGGACCTGTTAGAAATCGTTGAGATCGGTAGCCCGAGAGGGCAAAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAACAAAGGCAGGGCTTTCAAGGCTGGGATTGTCAAACCATTGTCGAAAATGCTGTCTGATTCAAATGGTTCTTTGGTTGATGACGCTCTCTATATAATGTCGGTTCTTTGCGGCCACCCGGAGGCGAAGGCTGCGATGGCGAATGCGAACTCCCTGCTTGTTTTGACTAACATTCTGAAGACGGGGTCGTCTCGCAGCAAGGAAAACGCAGCTGCTGTTCTACTTGCATTGTGCAAGGGAGACTACACCGACTGCGACGGCAAGGTCTCCCCTCACGATCTCCTCACCCACCTCCCCACTCTCATAGCCGAGGACCTGACCGAGGCAGAGGCCGCCGCCGCGGTGGCTGCCTTCGATTCGGACGGCGACGGGCTTCTGGGGATGGAGGAGTTTGGGAGGTTAGTGGAGGTGGATGATGATGAAGAGGTGAGGGAAGCTTTCCAGATGTATGAAATGGAGGGATTGGGAGTGATTACGCCGGTGAGCTTGCGGCGGACGCTCAGCCGCCTTGGGGAATCGAGGAGCGTCGGGGATTGCAAGAGAATGATTGCTAAATTTGATGTGAATGGCGATGGAGTTTTGTGTTTCGATGAATTTAGGGTTATGATGTTGCTCTGA 1992 48.19 MSSEVVGDGRRRALALQLLDLVRDFVLMSGRSIAGAGDVMKKDCTDLIRRIALLIHLAEEITNFCSGSGENFEALNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYAALTFSVYDEEGCATSTVDLVRAQLRRASNKYESMSNPAEKKLQARSSSVKWMINNDVKSMSSVDDDGDVESQHRPRNRDHLISLDSVNSCFDECSSVVHSDMEDVLASKSQDEVRKPVEVEIPENFLCPISFELIGNRTCPKTQEQLQSLILTPNFLMRKLISEWCEEHNVKLEEGLTTRKLKKYRSFEDDCRKTLPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDQRVEIAEAGAIPQLVYLLTSEDVATQENAISCILNLSLHEQNKRLVMLSGAVSYISQLLKVGSMEGRECAAATIYSLSLADENKAIIGASGVIPDLLEIVEIGSPRGQKDAAGALLNLCMHQGNKGRAFKAGIVKPLSKMLSDSNGSLVDDALYIMSVLCGHPEAKAAMANANSLLVLTNILKTGSSRSKENAAAVLLALCKGDYTDCDGKVSPHDLLTHLPTLIAEDLTEAEAAAAVAAFDSDGDGLLGMEEFGRLVEVDDDEEVREAFQMYEMEGLGVITPVSLRRTLSRLGESRSVGDCKRMIAKFDVNGDGVLCFDEFRVMMLL 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7207350 7213928 - Lsi09G006460.1 Lsi09g00646 670259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00646 663 ProSitePatterns EF-hand calcium-binding domain. 577 589 IPR018247 -
Lsi09g00646 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 344 386 IPR000225 GO:0005515
Lsi09g00646 663 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 22 111 - -
Lsi09g00646 663 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 122 540 - -
Lsi09g00646 663 Pfam EF hand 636 661 IPR002048 GO:0005509
Lsi09g00646 663 ProSitePatterns EF-hand calcium-binding domain. 645 657 IPR018247 -
Lsi09g00646 663 Pfam Armadillo/beta-catenin-like repeat 333 372 IPR000225 GO:0005515
Lsi09g00646 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 278 IPR013083 -
Lsi09g00646 663 Pfam EF-hand domain pair 544 591 IPR002048 GO:0005509
Lsi09g00646 663 SUPERFAMILY ARM repeat 304 559 IPR016024 -
Lsi09g00646 663 ProSiteProfiles EF-hand calcium-binding domain profile. 632 663 IPR002048 GO:0005509
Lsi09g00646 663 ProSiteProfiles U-box domain profile. 242 278 IPR003613 GO:0004842|GO:0016567
Lsi09g00646 663 SUPERFAMILY RING/U-box 223 278 - -
Lsi09g00646 663 SUPERFAMILY EF-hand 534 662 IPR011992 -
Lsi09g00646 663 SMART efh_1 568 596 IPR002048 GO:0005509
Lsi09g00646 663 SMART efh_1 636 663 IPR002048 GO:0005509
Lsi09g00646 663 SMART efh_1 600 628 IPR002048 GO:0005509
Lsi09g00646 663 PANTHER U BOX DOMAIN-CONTAINING 22 111 - -
Lsi09g00646 663 Gene3D - 286 563 IPR011989 -
Lsi09g00646 663 CDD EFh 600 661 IPR002048 GO:0005509
Lsi09g00646 663 PANTHER U BOX DOMAIN-CONTAINING 122 540 - -
Lsi09g00646 663 Gene3D - 564 663 - -
Lsi09g00646 663 ProSiteProfiles EF-hand calcium-binding domain profile. 564 599 IPR002048 GO:0005509
Lsi09g00646 663 SMART arm_5 374 414 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 497 537 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 456 496 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 333 373 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 415 455 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01143 Lsi09g00646 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00834 Lsi-Chr2:7820161 Lsi09g00646 Lsi-Chr9:7207350 2.61E-34 dispersed
Lsi04g01143 Lsi-Chr4:15795236 Lsi09g00646 Lsi-Chr9:7207350 1.50E-144 dispersed
Lsi06g01634 Lsi-Chr6:26650893 Lsi09g00646 Lsi-Chr9:7207350 1.36E-28 dispersed
Lsi07g01466 Lsi-Chr7:21333931 Lsi09g00646 Lsi-Chr9:7207350 6.29E-25 dispersed
Lsi09g00646 Lsi-Chr9:7207350 Lsi10g01368 Lsi-Chr10:17834008 1.27E-78 dispersed
Lsi09g00646 Lsi-Chr9:7207350 Lsi02g01363 Lsi-Chr2:18368167 4.66E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00646 - - cmax:111489474 783.867