Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01450 ATGTCAAACGGATTTGCCAATGCCGAAGGTGATAAACAGAAGAAGAAAATCGCCATCATTAGTGTCTCTTCTTTAATCCTCGTGGCAATGGTGGTTGCCGTTACCGTCGGCGTCAACAACGCACCCCACGAGGAGCACGATGATGGTCATGGTGGGGAAACTCATGAGATTTCATCAACGACTAAAGCAATCAAAGCCATTTGTCAACCAACAGATTACAAAGAATCCTGCGAGAAGAGTCTACTGGCAGAAGCAGGTAATACAACAGACCCAAAAGAGCTAGTGAAAGTTGGCTTCAAAATCGCCACGAGGAATCTAAACGAGGCGATTAGGAATTCCACCACACTTAAAGAATTAGCCAAAGATCCAAGAACCAACCAAGCCCTTCAAAATTGTCATGAGCTTCTAGAATATGCCATTGATGATTTGAATGAATCGTTTGAAAGAATTGGCACCTTCCAAATGTCCAAACTCGACGAGTTCGTTGGTGATTTAAAGATTTGGCTCAGTGGGGCTCTCACGTATGAACAAACTTGTTTGGATGGATTTGAAAACACAACTGGTGATGCTGGTGTGAGAATGCAAGAGTTTTTGAAGTCAGCTCAAGAAATGACAAGCAATGGCCTTGCCATTGTTAATGAATTGTCTAGCATTTTGGGGTCACTTCAAATTCCTGGAATGACTGGGCGGCGACTTTTGGAAGAGGACGATGAGGAAATGCCATCATGGGTTAGCGACGGAAAGAGACGATTGATGCAAATGCAAGCAGCAGGATCATCGGTGAAACCTGATTTGGTGGTGGCTCAAGATGGAAGTGGGAAATACAATACTATAAATGCAGCTTTGGCTGATGTGCCTTTGAAGAGTAACAAAACGTTTGTGATTTATGTGAAGGCTGGAATTTACAAGGAAATTGTTGTTATTCCCAAGGCTATGACTCATCTTACCATGTACGGTGACGGTCCAACTAAAACTATCGTTACTGGTAGTTTGAACTTTATTGACGGTGTTCAAACATTCAAGACCGCCACTTTCTCTGCAATTGGAGCCAATTTCTACGCTAGAGACATGGGATTCGAGAACACTGCAGGAGCAGCTAAGCACCAAGCCGTTGCCTTACGAGTCCAATCCGACAGATCAATTTTCTACAATTGCCAAATAGACGGTTACCAAGACACCCTCTACGCACATGCTCACCGTCAGTTTTACAGAGATTGCACAATCAGTGGCACCATCGACTTCGTCTTCGGTAACGCCGCCACCATTTTCCAGAACTGCAAACTAGTGGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACAGCTCACGGCCGTCTCGAGCGTCGTGAGCCAACAGCATTGATCTTCCAAAGCTGCCACTTCATGGGTGACCCAGCTTATTTGCCATTCAAGAACGTCAACAAGGCATACTTGGGCCGTCCTTGGAAGCAATATTCACGAACCATTATAATCGGGTCTCAAATCGACGATATAATCCAGCCTGAAGGATGGTTGCCATGGATGGGCGATTTTGGGTTGAATACGTTGTTCTACGCCGAGGTACAGAACACAGGACCAGGAGCTGATGAAAGCAAGAGAGTGAAATGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCTAGACGATTTATTCATGGCGATGCTTGGATTCCTGCTAAGGGAATTCCGTACTCTTCTGGAATGATGTAA 1728 45.02 MSNGFANAEGDKQKKKIAIISVSSLILVAMVVAVTVGVNNAPHEEHDDGHGGETHEISSTTKAIKAICQPTDYKESCEKSLLAEAGNTTDPKELVKVGFKIATRNLNEAIRNSTTLKELAKDPRTNQALQNCHELLEYAIDDLNESFERIGTFQMSKLDEFVGDLKIWLSGALTYEQTCLDGFENTTGDAGVRMQEFLKSAQEMTSNGLAIVNELSSILGSLQIPGMTGRRLLEEDDEEMPSWVSDGKRRLMQMQAAGSSVKPDLVVAQDGSGKYNTINAALADVPLKSNKTFVIYVKAGIYKEIVVIPKAMTHLTMYGDGPTKTIVTGSLNFIDGVQTFKTATFSAIGANFYARDMGFENTAGAAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATIFQNCKLVVRKPMDNQQCIVTAHGRLERREPTALIFQSCHFMGDPAYLPFKNVNKAYLGRPWKQYSRTIIIGSQIDDIIQPEGWLPWMGDFGLNTLFYAEVQNTGPGADESKRVKWRGIKHITPQHAADFTPRRFIHGDAWIPAKGIPYSSGMM 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22477690 22479819 - Lsi09G014500.1 Lsi09g01450 671063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01450 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
Lsi09g01450 575 PANTHER PECTINESTERASE 19 573 - -
Lsi09g01450 575 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Lsi09g01450 575 SUPERFAMILY Pectin lyase-like 259 573 IPR011050 -
Lsi09g01450 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Lsi09g01450 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857
Lsi09g01450 575 Pfam Pectinesterase 264 560 IPR000070 GO:0030599|GO:0042545
Lsi09g01450 575 SMART PMEI_2 59 211 IPR006501 GO:0004857
Lsi09g01450 575 Pfam Plant invertase/pectin methylesterase inhibitor 63 211 IPR006501 GO:0004857
Lsi09g01450 575 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Lsi09g01450 575 CDD PMEI-like_3 66 217 - -
Lsi09g01450 575 Gene3D - 258 574 IPR012334 -
Lsi09g01450 575 PANTHER PECTINESTERASE 19 573 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01558 Lsi09g01450 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00089 Lsi-Chr6:897490 Lsi09g01450 Lsi-Chr9:22477690 6.61E-111 dispersed
Lsi09g01450 Lsi-Chr9:22477690 Lsi02g02855 Lsi-Chr2:34762746 2.16E-140 dispersed
Lsi02g00057 Lsi-Chr2:539539 Lsi09g01450 Lsi-Chr9:22477690 9.08E-19 transposed
Lsi02g00946 Lsi-Chr2:9404319 Lsi09g01450 Lsi-Chr9:22477690 4.07E-134 transposed
Lsi07g00642 Lsi-Chr7:6857228 Lsi09g01450 Lsi-Chr9:22477690 4.16E-146 transposed
Lsi11g00122 Lsi-Chr11:1390273 Lsi09g01450 Lsi-Chr9:22477690 3.18E-180 transposed
Lsi05g01558 Lsi-Chr5:23346044 Lsi09g01450 Lsi-Chr9:22477690 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01450 K01051 - csv:101221958 1028.08